CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCAFG00000000389
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000000389
T34964_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000000565
RRM
15
68
LFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVPRHLEEVAA
ENSCAFP00000000565
RRM
104
173
IFVGGIKGDAEEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCE
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSBTAG00000012502
Bos taurus
ENSBTAG00000012502
I
0.736
ENSCAFG00000006386
Canis familiaris
ENSCAFG00000006386
I
0.713
ENSCAFG00000013932
Canis familiaris
ENSCAFG00000013932
I
0.719
ENSCAFG00000016707
Canis familiaris
ENSCAFG00000016707
I
0.711
ENSCAFG00000017467
Canis familiaris
ENSCAFG00000017467
I
0.726
ENSCAFG00000024812
Canis familiaris
ENSCAFG00000024812
I
0.726
ENSCPOG00000020972
Cavia porcellus
ENSCPOG00000020972
N
0.702
ENSETEG00000012394
Echinops telfairi
ENSETEG00000012394
N
0.702
ENSMMUG00000017582
Macaca mulatta
ENSMMUG00000017582
N
0.706