ENSCAFG00000013932 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000013932 T35122_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.807
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.807
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.807
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000020516 RRM 19 72
ENSCAFP00000020516 RRM 105 174

Links

Other RRM family RBPs
Other Canis familiaris RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.935
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.919
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.852
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.825
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.809
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.799
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.784
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.783
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.780
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.775
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.775
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.775
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.775
HNRNPA1 Homo sapiens ENSG00000135486 D 0.775
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.775
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.775
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.775
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.775
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.775
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.775
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.775
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.775
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.775
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.775
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.775
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.775
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.775
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.775
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.775
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.775
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.775
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.775
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.775
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.775
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.775
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.775
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.773
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.771
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.768
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.768
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.768
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.768
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.768
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.768
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.768
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.768
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.768
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.764
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.763
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.763
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.761
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.761
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.761
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.761
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.761
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.761
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.761
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.761
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.761
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.761
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.761
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.757
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.757
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.755
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.754
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.754
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.754
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.754
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.754
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.754
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.754
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.754
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.754
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.752
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.752
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.752
LOC100054206 Equus caballus ENSECAG00000006699 I 0.750
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.748
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.746
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.746
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.746
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.746
LOC785445 Bos taurus ENSBTAG00000025621 I 0.746
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.746
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.746
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.746
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.744
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.740
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.739
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.739
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.739
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.738
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.736
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.734
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.734
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.732
AAH72090 Xenopus laevis AAH72090 I 0.732
CBU92546 Xenopus laevis CBU92546 I 0.732
AAH45260 Xenopus laevis AAH45260 I 0.732
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.732
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.732
CBF67672 Xenopus laevis CBF67672 I 0.732
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.732
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.732
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.730
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.729
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.729
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.729
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.727
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.725
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.725
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.725
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.724
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.721
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.720
ENSCAFG00000000389 Canis familiaris ENSCAFG00000000389 N 0.719
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.718
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.718
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.718
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.718
P17130 Xenopus laevis P17130 I 0.718
CBF67555 Xenopus laevis CBF67555 I 0.718
AAA49742 Xenopus laevis AAA49742 I 0.718
AAA49741 Xenopus laevis AAA49741 I 0.718
CBU92428 Xenopus laevis CBU92428 I 0.718
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.718
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.718
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.711
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.711
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.711
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.711
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.711
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.706
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.704
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.704
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.704
ENSETEG00000007429 Echinops telfairi ENSETEG00000007429 N 0.703