ENSCAFG00000024812 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000024812 T35218_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.821
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.821
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.821
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000005203 RRM 16 69
ENSCAFP00000005203 RRM 102 171

Links

Other RRM family RBPs
Other Canis familiaris RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.968
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.935
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.859
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.849
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.831
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.806
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.797
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.791
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.789
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.789
HNRNPA1 Homo sapiens ENSG00000135486 D 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.789
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.789
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.789
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.789
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.789
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.789
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.789
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.789
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.789
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.789
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.789
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.789
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.789
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.789
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.789
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.789
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.789
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.789
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.789
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.789
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.789
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.787
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.787
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.786
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.786
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.786
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.784
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.784
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.784
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.782
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.782
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.782
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.782
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.782
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.782
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.782
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.782
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.782
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.779
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.775
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.775
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.775
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.775
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.775
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.775
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.775
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.775
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.775
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.775
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.775
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.768
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.768
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.768
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.768
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.768
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.768
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.768
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.768
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.767
LOC100054206 Equus caballus ENSECAG00000006699 I 0.764
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.764
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.763
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.762
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.761
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.761
LOC785445 Bos taurus ENSBTAG00000025621 I 0.761
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.761
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.761
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.761
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.759
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.759
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.756
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.755
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.754
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.754
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.752
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.750
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.750
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.750
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.746
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.746
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.746
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.746
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.746
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.746
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.744
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.743
AAH72090 Xenopus laevis AAH72090 I 0.739
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.739
CBF67672 Xenopus laevis CBF67672 I 0.739
AAH45260 Xenopus laevis AAH45260 I 0.739
CBU92546 Xenopus laevis CBU92546 I 0.739
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.739
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.739
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.739
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.738
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.736
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.734
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.732
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.732
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.732
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.732
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.732
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.732
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.727
ENSCAFG00000000389 Canis familiaris ENSCAFG00000000389 N 0.726
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.725
AAA49742 Xenopus laevis AAA49742 I 0.725
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.725
AAA49741 Xenopus laevis AAA49741 I 0.725
CBF67555 Xenopus laevis CBF67555 I 0.725
CBU92428 Xenopus laevis CBU92428 I 0.725
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.725
P17130 Xenopus laevis P17130 I 0.725
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.724
ENSETEG00000012394 Echinops telfairi ENSETEG00000012394 N 0.719
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.718
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.718
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.718
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.713
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.713
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.713
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.711
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.711
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.711
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.711
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.711
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.709
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.704
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.704
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.704
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.704
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.704
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.704
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.704
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.704
ENSBTAG00000012763 Bos taurus ENSBTAG00000012763 N 0.703
ENSETEG00000007429 Echinops telfairi ENSETEG00000007429 N 0.703
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.700
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.700