ENSCAFG00000016707 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000016707 T35144_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.807
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.807
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.807
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000024568 RRM 2 55
ENSCAFP00000024568 RRM 88 157

Links

Other RRM family RBPs
Other Canis familiaris RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.968
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.919
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.844
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.833
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.816
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.791
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.791
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.787
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.786
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.783
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.782
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.776
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.775
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.775
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.775
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.775
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.775
HNRNPA1 Homo sapiens ENSG00000135486 D 0.775
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.775
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.775
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.775
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.775
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.775
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.775
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.775
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.775
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.775
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.775
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.775
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.775
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.775
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.775
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.775
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.775
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.775
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.775
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.775
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.775
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.775
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.773
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.771
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.771
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.771
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.770
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.770
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.768
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.768
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.768
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.768
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.768
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.768
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.768
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.768
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.768
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.763
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.761
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.761
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.761
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.761
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.761
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.761
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.761
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.761
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.761
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.761
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.761
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.759
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.756
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.754
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.754
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.754
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.754
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.754
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.754
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.754
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.754
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.752
LOC100054206 Equus caballus ENSECAG00000006699 I 0.750
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.748
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.748
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.746
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.746
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.746
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.746
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.746
LOC785445 Bos taurus ENSBTAG00000025621 I 0.746
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.745
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.743
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.739
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.739
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.739
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.738
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.736
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.736
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.736
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.734
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.732
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.732
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.732
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.732
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.729
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.727
CBF67672 Xenopus laevis CBF67672 I 0.725
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.725
CBU92546 Xenopus laevis CBU92546 I 0.725
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.725
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.725
AAH72090 Xenopus laevis AAH72090 I 0.725
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.725
AAH45260 Xenopus laevis AAH45260 I 0.725
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.723
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.721
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.719
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.718
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.718
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.718
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.718
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.718
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.718
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.718
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.716
CBF67555 Xenopus laevis CBF67555 I 0.711
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.711
AAA49742 Xenopus laevis AAA49742 I 0.711
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.711
CBU92428 Xenopus laevis CBU92428 I 0.711
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.711
P17130 Xenopus laevis P17130 I 0.711
AAA49741 Xenopus laevis AAA49741 I 0.711
ENSCAFG00000000389 Canis familiaris ENSCAFG00000000389 N 0.711
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.706
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.706
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.706
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.704
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.704
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.704
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.704
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.704
ENSETEG00000012394 Echinops telfairi ENSETEG00000012394 N 0.703