ENSCAFG00000006386 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000006386 T35040_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.771
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.771
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.771
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000009567 RRM 27 75
ENSCAFP00000009567 RRM 116 185

Links

Other RRM family RBPs
Other Canis familiaris RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.849
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.833
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.825
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.817
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.764
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.754
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.754
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.750
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.750
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.750
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.750
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.748
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.746
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.746
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.745
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.744
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.743
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.743
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.739
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.739
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.739
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.739
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.739
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.739
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.739
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.739
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.739
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.739
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.739
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.739
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.739
HNRNPA1 Homo sapiens ENSG00000135486 D 0.739
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.739
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.739
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.739
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.739
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.739
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.739
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.739
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.739
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.739
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.739
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.739
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.739
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.739
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.739
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.739
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.738
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
LOC100054206 Equus caballus ENSECAG00000006699 I 0.736
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.734
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.732
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.732
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.732
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.732
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.732
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.732
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.732
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.732
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.732
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.732
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.732
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.725
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.725
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.725
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.725
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.725
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.725
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.725
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.725
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.725
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.723
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.721
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.719
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.718
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.718
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.718
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.718
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.718
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.718
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.718
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.716
ENSETEG00000012394 Echinops telfairi ENSETEG00000012394 N 0.715
ENSBTAG00000012763 Bos taurus ENSBTAG00000012763 N 0.715
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.714
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.713
ENSCAFG00000000389 Canis familiaris ENSCAFG00000000389 N 0.713
LOC785445 Bos taurus ENSBTAG00000025621 I 0.711
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.711
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.711
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.711
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.711
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.711
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.711
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.711
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.711
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.709
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.708
ENSCPOG00000020972 Cavia porcellus ENSCPOG00000020972 N 0.707
ENSETEG00000007429 Echinops telfairi ENSETEG00000007429 N 0.707
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.707
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.705
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.704
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.704
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.704
AAH45260 Xenopus laevis AAH45260 I 0.704
AAH72090 Xenopus laevis AAH72090 I 0.704
CBU92546 Xenopus laevis CBU92546 I 0.704
CBF67672 Xenopus laevis CBF67672 I 0.704
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.700