LOC100386194 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001431 T35467_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		1.000
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		1.000
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.759
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002551 RRM 54 118
ENSCJAP00000002551 RRM 128 195

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29772.m000320 Ricinus communis 29772.m000320 N 0.000
29806.m000954 Ricinus communis 29806.m000954 N 0.000
30147.m014356 Ricinus communis 30147.m014356 N 0.000
30147.m014359 Ricinus communis 30147.m014359 N 0.000
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.000
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.000
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.000
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.000
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.000
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.000
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.000
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.000
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.000
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.000
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.000
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.000
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.000
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.000
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.000
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.000
estExt_genewise1.C_Chr_06.00010404 Ostreococcus tauri estExt_genewise1.C_Chr_06.00010404 N 0.000
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.000
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.000
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.000
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.000
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.000
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.000
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.000
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.000
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.000
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.000
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.000
gw1.6.1594.1 Ostreococcus RCC809 gw1.6.1594.1 N 0.000
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.000
gwEuk.6.483.1 Ostreococcus lucimarinus gwEuk.6.483.1 N 0.000
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.000
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.000
MDP0000243651 Malus x domestica MDP0000243651 N 0.000
MDP0000562891 Malus x domestica MDP0000562891 N 0.000
MDP0000623378 Malus x domestica MDP0000623378 N 0.000
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.000
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.000
mgf005737m Mimulus guttatus mgf005737m N 0.000
mgf006490m Mimulus guttatus mgf006490m N 0.000
mgf007186m Mimulus guttatus mgf007186m N 0.000
mgf023117m Mimulus guttatus mgf023117m N 0.000
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.000
PK11764.1 Cannabis sativa PK11764.1 N 0.000
PK23225.1 Cannabis sativa PK23225.1 N 0.000
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.000
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.000
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.000
ppa010052m Prunus persica ppa010052m N 0.000
ppa011157m Prunus persica ppa011157m N 0.000
SB01G028780 Sorghum bicolor Sb01g028780 N 0.000
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.000
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.000