XM_002864051.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_801545.1 T46147_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_801545.1 RRM 107 175

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 1.000
PK23225.1 Cannabis sativa PK23225.1 N 0.957
MDP0000243651 Malus x domestica MDP0000243651 N 0.957
mgf006490m Mimulus guttatus mgf006490m N 0.942
ppa010052m Prunus persica ppa010052m N 0.942
mgf005737m Mimulus guttatus mgf005737m N 0.942
30147.m014356 Ricinus communis 30147.m014356 N 0.942
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.928
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.928
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.928
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.928
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.928
30147.m014359 Ricinus communis 30147.m014359 N 0.928
mgf023117m Mimulus guttatus mgf023117m N 0.928
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.928
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.913
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.913
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.899
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.899
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.899
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.899
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.899
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.899
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.899
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.899
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.884
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.884
PK11764.1 Cannabis sativa PK11764.1 N 0.884
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.884
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.884
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.884
ppa011157m Prunus persica ppa011157m N 0.884
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.884
MDP0000623378 Malus x domestica MDP0000623378 N 0.884
MDP0000562891 Malus x domestica MDP0000562891 N 0.884
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.884
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.884
29772.m000320 Ricinus communis 29772.m000320 N 0.884
mgf007186m Mimulus guttatus mgf007186m N 0.884
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.884
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.884
SB10G007620 Sorghum bicolor Sb10g007620 N 0.884
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.870
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.870
PK03244.1 Cannabis sativa PK03244.1 N 0.870
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.870
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.855
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.855
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.855
SB01G028780 Sorghum bicolor Sb01g028780 N 0.855
MDP0000186271 Malus x domestica MDP0000186271 N 0.855
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.855
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.855
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.841
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.841
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.841
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.841
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.841
MDP0000123472 Malus x domestica MDP0000123472 N 0.841
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.841
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.841
MDP0000258062 Malus x domestica MDP0000258062 N 0.841
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.826
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.826
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.826
29806.m000954 Ricinus communis 29806.m000954 N 0.812
mgf014092m Mimulus guttatus mgf014092m N 0.783
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.783
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.783
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.783
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.754
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.754
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.754
UM02401 Ustilago maydis UM02401 N 0.743
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.739
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.739
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.725
EDP44971.1 Malassezia globosa EDP44971.1 N 0.700