cassava28879.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava28879.valid.m1 T49254_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava28879.valid.m1 RRM 92 160

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.986
29772.m000320 Ricinus communis 29772.m000320 N 0.971
ppa011157m Prunus persica ppa011157m N 0.957
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.957
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.957
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.957
PK11764.1 Cannabis sativa PK11764.1 N 0.942
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.942
PK03244.1 Cannabis sativa PK03244.1 N 0.928
mgf007186m Mimulus guttatus mgf007186m N 0.928
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.928
PK23225.1 Cannabis sativa PK23225.1 N 0.928
29806.m000954 Ricinus communis 29806.m000954 N 0.928
30147.m014359 Ricinus communis 30147.m014359 N 0.928
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.928
SB10G007620 Sorghum bicolor Sb10g007620 N 0.928
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.928
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.928
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.928
MDP0000243651 Malus x domestica MDP0000243651 N 0.928
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.928
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.913
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.913
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.913
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.913
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.913
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.913
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.913
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.913
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.913
mgf005737m Mimulus guttatus mgf005737m N 0.913
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.913
30147.m014356 Ricinus communis 30147.m014356 N 0.913
mgf006490m Mimulus guttatus mgf006490m N 0.913
ppa010052m Prunus persica ppa010052m N 0.913
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.913
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.899
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.899
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.899
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.899
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.899
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.899
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.899
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.899
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.899
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.899
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.899
mgf023117m Mimulus guttatus mgf023117m N 0.899
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.899
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.899
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.884
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.884
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.884
MDP0000562891 Malus x domestica MDP0000562891 N 0.884
MDP0000623378 Malus x domestica MDP0000623378 N 0.884
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.884
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.884
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.884
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.870
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.870
MDP0000186271 Malus x domestica MDP0000186271 N 0.870
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.870
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.870
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.855
MDP0000258062 Malus x domestica MDP0000258062 N 0.855
MDP0000123472 Malus x domestica MDP0000123472 N 0.855
mgf014092m Mimulus guttatus mgf014092m N 0.855
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.841
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.841
SB01G028780 Sorghum bicolor Sb01g028780 N 0.841
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.783
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.783
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.768
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.768
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.768
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.739
CAOG_03505 Capsaspora owczarzaki CAOG_03505 N 0.700