Cucsa.104260 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.104260 T49550_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.104260.1 RRM 85 153
Cucsa.104260.2 RRM 85 153

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.957
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.957
29772.m000320 Ricinus communis 29772.m000320 N 0.942
PK11764.1 Cannabis sativa PK11764.1 N 0.928
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.928
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.913
mgf005737m Mimulus guttatus mgf005737m N 0.913
mgf007186m Mimulus guttatus mgf007186m N 0.913
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.913
mgf006490m Mimulus guttatus mgf006490m N 0.913
ppa011157m Prunus persica ppa011157m N 0.913
MDP0000243651 Malus x domestica MDP0000243651 N 0.899
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.899
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.899
SB10G007620 Sorghum bicolor Sb10g007620 N 0.899
PK03244.1 Cannabis sativa PK03244.1 N 0.899
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.899
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.899
PK23225.1 Cannabis sativa PK23225.1 N 0.899
30147.m014359 Ricinus communis 30147.m014359 N 0.899
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.899
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.899
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.884
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.884
30147.m014356 Ricinus communis 30147.m014356 N 0.884
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.884
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.884
ppa010052m Prunus persica ppa010052m N 0.884
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.884
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.884
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.884
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.870
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.870
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.870
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.870
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.870
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.870
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.870
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.870
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.870
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.870
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.870
mgf023117m Mimulus guttatus mgf023117m N 0.870
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.870
29806.m000954 Ricinus communis 29806.m000954 N 0.855
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.855
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.855
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.855
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.855
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.855
MDP0000562891 Malus x domestica MDP0000562891 N 0.855
MDP0000623378 Malus x domestica MDP0000623378 N 0.855
MDP0000186271 Malus x domestica MDP0000186271 N 0.855
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.841
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.841
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.841
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.841
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.841
MDP0000258062 Malus x domestica MDP0000258062 N 0.841
MDP0000123472 Malus x domestica MDP0000123472 N 0.841
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.841
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.841
SB01G028780 Sorghum bicolor Sb01g028780 N 0.826
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.826
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.826
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.797
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.797
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.797
mgf014092m Mimulus guttatus mgf014092m N 0.783
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.768
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.754
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.739
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.739
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.739
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.739
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.710
CAOG_03505 Capsaspora owczarzaki CAOG_03505 N 0.700