estExt_Genewise1.C_10557 (Volvox carteri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_10557 T51169_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_10557 RRM 104 172

Links

Other RRM family RBPs
Other Volvox carteri RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.913
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.855
ppa010052m Prunus persica ppa010052m N 0.841
30147.m014356 Ricinus communis 30147.m014356 N 0.841
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.841
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.826
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.826
PK23225.1 Cannabis sativa PK23225.1 N 0.826
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.826
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.826
MDP0000243651 Malus x domestica MDP0000243651 N 0.826
30147.m014359 Ricinus communis 30147.m014359 N 0.826
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.826
mgf023117m Mimulus guttatus mgf023117m N 0.826
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.826
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.826
mgf006490m Mimulus guttatus mgf006490m N 0.812
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.812
mgf005737m Mimulus guttatus mgf005737m N 0.812
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.797
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.797
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.797
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.797
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.783
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.783
PK03244.1 Cannabis sativa PK03244.1 N 0.783
SB10G007620 Sorghum bicolor Sb10g007620 N 0.783
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.783
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.783
29772.m000320 Ricinus communis 29772.m000320 N 0.783
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.783
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.783
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.783
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.783
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.783
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.783
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.768
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.768
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.768
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.768
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.768
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.768
ppa011157m Prunus persica ppa011157m N 0.768
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.768
PK11764.1 Cannabis sativa PK11764.1 N 0.768
mgf007186m Mimulus guttatus mgf007186m N 0.768
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.768
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.768
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.768
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.754
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.754
29806.m000954 Ricinus communis 29806.m000954 N 0.754
MDP0000623378 Malus x domestica MDP0000623378 N 0.754
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.754
MDP0000562891 Malus x domestica MDP0000562891 N 0.754
mgf014092m Mimulus guttatus mgf014092m N 0.754
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.754
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.754
SB01G028780 Sorghum bicolor Sb01g028780 N 0.754
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.754
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.739
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.739
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.739
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.739
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.739
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.739
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.739
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.739
fgenesh1_pm.C_scaffold_6000038 Sporobolomyces roseus fgenesh1_pm.C_scaffold_6000038 N 0.725
estExt_genewise1.C_Chr_06.00010404 Ostreococcus tauri estExt_genewise1.C_Chr_06.00010404 N 0.725
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.725
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.725
fgenesh_newKGs_kg.137__31__2692003:1 Emiliania huxleyi fgenesh_newKGs_kg.137__31__2692003:1 N 0.725
MDP0000186271 Malus x domestica MDP0000186271 N 0.710
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.710
23087 Aureococcus anophagefferens 23087 N 0.704
RO3G_09831 Rhizopus oryzae RO3G_09831 N 0.700