estExt_Genewise1.C_260068 (Coccomyxa C 169)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_260068 T56429_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_260068 RRM 81 149

Links

Other RRM family RBPs
Other Coccomyxa C 169 RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 1.000
gw1.9.256.1 Chlorella NC64A gw1.9.256.1 N 0.841
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.826
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.812
30147.m014359 Ricinus communis 30147.m014359 N 0.812
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.797
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.797
ppa010052m Prunus persica ppa010052m N 0.797
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.797
30147.m014356 Ricinus communis 30147.m014356 N 0.797
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.797
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.783
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.783
MDP0000243651 Malus x domestica MDP0000243651 N 0.783
PK23225.1 Cannabis sativa PK23225.1 N 0.783
ppa011157m Prunus persica ppa011157m N 0.783
PK11764.1 Cannabis sativa PK11764.1 N 0.783
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.783
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.768
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.768
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.768
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.768
29772.m000320 Ricinus communis 29772.m000320 N 0.768
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.768
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.768
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.768
mgf006490m Mimulus guttatus mgf006490m N 0.768
mgf007186m Mimulus guttatus mgf007186m N 0.768
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.768
mgf005737m Mimulus guttatus mgf005737m N 0.768
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.768
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.768
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.754
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.754
mgf023117m Mimulus guttatus mgf023117m N 0.754
estExt_genewise1.C_Chr_06.00010404 Ostreococcus tauri estExt_genewise1.C_Chr_06.00010404 N 0.754
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.754
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.754
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.754
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.754
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.754
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.754
PK03244.1 Cannabis sativa PK03244.1 N 0.754
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.754
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.739
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.739
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.739
29806.m000954 Ricinus communis 29806.m000954 N 0.739
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.739
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.739
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.739
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.739
MDP0000562891 Malus x domestica MDP0000562891 N 0.739
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.739
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.739
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.739
MDP0000623378 Malus x domestica MDP0000623378 N 0.739
gwEuk.6.483.1 Ostreococcus lucimarinus gwEuk.6.483.1 N 0.725
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.725
MDP0000186271 Malus x domestica MDP0000186271 N 0.725
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.725
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.725
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.725
SB10G007620 Sorghum bicolor Sb10g007620 N 0.725
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.725
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.725
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.725
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.725
MDP0000123472 Malus x domestica MDP0000123472 N 0.710
fgenesh1_pm.C_scaffold_6000038 Sporobolomyces roseus fgenesh1_pm.C_scaffold_6000038 N 0.710
MDP0000258062 Malus x domestica MDP0000258062 N 0.710
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.710
SB01G028780 Sorghum bicolor Sb01g028780 N 0.710
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.710
estExt_fgenesh1_pg.C_120138 Phytophthora capsici estExt_fgenesh1_pg.C_120138 N 0.700
pab2 Schizosaccharomyces pombe SPBC16E9.12c N 0.700
SPRG_02264 Saprolegnia parasitica SPRG_02264 N 0.700
PITG_15784 Phytophthora infestans PITG_15784 N 0.700
s_459723 Phytophthora sojae s_459723 N 0.700
gwEuk.4.69.1 Phytophthora ramorum gwEuk.4.69.1 N 0.700