POPTR_0005s07440 (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s07440 T45506_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s07440.1 RRM 12 78

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.940
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.912
MDP0000623378 Malus x domestica MDP0000623378 N 0.910
MDP0000562891 Malus x domestica MDP0000562891 N 0.910
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.899
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.899
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.899
29772.m000320 Ricinus communis 29772.m000320 N 0.899
ppa011157m Prunus persica ppa011157m N 0.899
MDP0000186271 Malus x domestica MDP0000186271 N 0.897
MDP0000123472 Malus x domestica MDP0000123472 N 0.896
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.896
MDP0000258062 Malus x domestica MDP0000258062 N 0.896
PK23225.1 Cannabis sativa PK23225.1 N 0.884
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.884
MDP0000243651 Malus x domestica MDP0000243651 N 0.884
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.884
mgf007186m Mimulus guttatus mgf007186m N 0.884
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.881
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.870
mgf006490m Mimulus guttatus mgf006490m N 0.870
mgf005737m Mimulus guttatus mgf005737m N 0.870
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.870
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.870
PK11764.1 Cannabis sativa PK11764.1 N 0.870
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.870
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.870
SB10G007620 Sorghum bicolor Sb10g007620 N 0.870
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.870
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.870
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.870
30147.m014356 Ricinus communis 30147.m014356 N 0.870
30147.m014359 Ricinus communis 30147.m014359 N 0.870
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.870
ppa010052m Prunus persica ppa010052m N 0.870
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.855
PK03244.1 Cannabis sativa PK03244.1 N 0.855
mgf023117m Mimulus guttatus mgf023117m N 0.855
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.855
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.855
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.855
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.855
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.855
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.855
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.855
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.855
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.855
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.855
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.855
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.855
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.855
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.855
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.841
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.841
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.841
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.841
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.836
29806.m000954 Ricinus communis 29806.m000954 N 0.826
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.826
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.826
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.826
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.826
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.812
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.812
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.812
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.797
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.797
SB01G028780 Sorghum bicolor Sb01g028780 N 0.797
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.768
mgf014092m Mimulus guttatus mgf014092m N 0.768
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.739
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.725
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.725
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.725
EuGene.0000060218 Micromonas pusilla EuGene.0000060218 N 0.710