ENSCSAVG00000001047 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000001047 T35942_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000001806 RRM 39 109
ENSCSAVP00000001807 RRM 39 109

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
145168 Helobdella robusta 145168 N 0.746
AAH56844 Xenopus laevis AAH56844 N 0.703
AGAP000977 Anopheles gambiae AGAP000977 N 0.732
Ame_R006638 Ailuropoda melanoleuca Ame_R006638 N 0.792
Aqu1.200557 Amphimedon queenslandica Aqu1.200557 N 0.732
Aqu1.228439 Amphimedon queenslandica Aqu1.228439 N 0.732
Bm1_02690 Brugia malayi Bm1_02690 N 0.817
C30B5.4 Caenorhabditis elegans C30B5.4 N 0.732
CBG02589 Caenorhabditis briggsae CBG02589 N 0.718
CBN24057 Caenorhabditis brenneri CBN24057 N 0.704
CJA10629 Caenorhabditis japonica CJA10629 N 0.704
CRE26315 Caenorhabditis remanei CRE26315 N 0.704
RBMX2 Anolis carolinensis ENSACAG00000008819 N 0.778
LOC534630 Bos taurus ENSBTAG00000006252 N 0.732
LOC613705 Bos taurus ENSBTAG00000014771 N 0.732
RBMX2 Canis familiaris ENSCAFG00000018770 N 0.770
ENSCING00000015467 Ciona intestinalis ENSCING00000015467 N 0.831
LOC100388331 Callithrix jacchus ENSCJAG00000002436 N 0.792
RBMX2 Cavia porcellus ENSCPOG00000006640 N 0.806
rbmx2 Danio rerio ENSDARG00000044380 N 0.775
LOC100058600 Equus caballus ENSECAG00000008257 N 0.792
RBMX2 Erinaceus europaeus ENSEEUG00000000839 N 0.750
RBMX2 Echinops telfairi ENSETEG00000001763 N 0.792
RBMX2 Homo sapiens ENSG00000134597 N 0.792
RBMX2 Gasterosteus aculeatus ENSGACG00000001855 N 0.775
RBMX2 Gallus gallus ENSGALG00000004025 N 0.750
ENSGGOG00000016146 Gorilla gorilla ENSGGOG00000016146 N 0.778
RBMX2 Gorilla gorilla ENSGGOG00000023687 N 0.792
ENSGGOG00000026106 Gorilla gorilla ENSGGOG00000026106 N 0.764
RBMX2 Loxodonta africana ENSLAFG00000017625 N 0.730
ENSLAFG00000028277 Loxodonta africana ENSLAFG00000028277 N 0.789
RBMX2 Macropus eugenii ENSMEUG00000010913 N 0.778
RBMX2 Meleagris gallopavo ENSMGAG00000001801 N 0.750
RBMX2 Microcebus murinus ENSMICG00000015139 N 0.792
ENSMLUG00000010298 Myotis lucifugus ENSMLUG00000010298 N 0.792
ENSMLUG00000017095 Myotis lucifugus ENSMLUG00000017095 N 0.803
RBMX2 Macaca mulatta ENSMMUG00000008389 N 0.792
XP_001110036.1 Macaca mulatta ENSMMUG00000020845 N 0.778
ENSMODG00000011981 Monodelphis domestica ENSMODG00000011981 N 0.704
XM_001377711.1 Monodelphis domestica ENSMODG00000012002 N 0.764
ENSMODG00000019800 Monodelphis domestica ENSMODG00000019800 N 0.764
Rbmx2 Mus musculus ENSMUSG00000031107 N 0.778
RBMX2 Ornithorhynchus anatinus ENSOANG00000001362 N 0.757
RBMX2 Oryctolagus cuniculus ENSOCUG00000011809 N 0.781
ENSOGAG00000006237 Otolemur garnettii ENSOGAG00000006237 N 0.792
ENSOGAG00000009060 Otolemur garnettii ENSOGAG00000009060 N 0.764
RBMX2 Oryzias latipes ENSORLG00000013183 N 0.775
RBMX2 Procavia capensis ENSPCAG00000012903 N 0.750
ENSPPYG00000020717 Pongo pygmaeus ENSPPYG00000020717 N 0.764
XR_023755.1 Pan troglodytes ENSPTRG00000022269 N 0.764
RBMX2 Pteropus vampyrus ENSPVAG00000004425 N 0.792
Rbmx2 Rattus norvegicus ENSRNOG00000007371 N 0.778
RBMX2 Sorex araneus ENSSARG00000007350 N 0.803
RBMX2 Spermophilus tridecemlineatus ENSSTOG00000015391 N 0.792
RBMX2 Tetraodon nigroviridis ENSTNIG00000007672 N 0.789
RBMX2 Takifugu rubripes ENSTRUG00000001699 N 0.803
RBMX2 Tarsius syrichta ENSTSYG00000010611 N 0.718
RBMX2 Tursiops truncatus ENSTTRG00000016210 N 0.792
estExt_fgenesh1_pg.C_30395 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_30395 N 0.704
estExt_fgenesh2_pg.C_1800064 Branchiostoma floridae estExt_fgenesh2_pg.C_1800064 N 0.775
estExt_Genewise1Plus.C_110324 Daphnia pulex estExt_Genewise1Plus.C_110324 N 0.732
e_gw1.98.15.1 Volvox carteri e_gw1.98.15.1 N 0.718
CG10466 Drosophila melanogaster FBgn0032822 N 0.718
GA10331-RA Drosophila pseudoobscura FBgn0070389 N 0.732
GF14433 Drosophila ananassae FBgn0091460 N 0.718
GG21207 Drosophila erecta FBgn0113387 N 0.718
GH13830 Drosophila grimshawi FBgn0121306 N 0.718
GI11259 Drosophila mojavensis FBgn0134020 N 0.732
GI11260 Drosophila mojavensis FBgn0134021 N 0.732
GI20215 Drosophila mojavensis FBgn0142951 N 0.732
GL26176 Drosophila persimilis FBgn0163758 N 0.732
GM17378 Drosophila sechellia FBgn0172288 N 0.718
GD24233 Drosophila simulans FBgn0195582 N 0.718
GJ13600 Drosophila virilis FBgn0200822 N 0.746
GK14925 Drosophila willistoni FBgn0216930 N 0.718
GE13281 Drosophila yakuba FBgn0230967 N 0.718
fgenesh2_pg.C_sca_10000115 Lottia gigantea fgenesh2_pg.C_sca_10000115 N 0.732
GSTUMT00000089001 Tuber melanosporum GSTUMT00000089001 N 0.704
gw1.1.2440.1 Mucor circinelloides gw1.1.2440.1 N 0.718
gw1.462.53.1 Capitella teleta gw1.462.53.1 N 0.789
LOAG_03303 Loa loa LOAG_03303 N 0.757
nasonia_NCBI_hmm382923 Nasonia vitripennis nasonia_NCBI_hmm382923 N 0.761
PABG_03870 Paracoccidioides brasiliensis PABG_03870 N 0.704
PHUM617480 Pediculus humanus PHUM617480 N 0.704
PredSwiss_CON1238.1 Pneumocystis carinii PredSwiss_CON1238.1 N 0.718
Sjc_0109550 Schistosoma japonicum Sjc_0109550 N 0.743
Smp_170230 Schistosoma mansoni Smp_170230 N 0.743
WUBG_13107 Wuchereria bancrofti WUBG_13107 N 0.817
XP_001180915.1 Strongylocentrotus purpuratus XP_001180915.1 N 0.732
XP_002164481.1 Hydra magnipapillata XP_002164481.1 N 0.732
XP_791635.2 Strongylocentrotus purpuratus XP_791635.2 N 0.732