CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.1.2440.1
(
Mucor circinelloides
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.1.2440.1
T53083_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.1.2440.1
RRM
35
105
IYAGGLPYDLTEGDIVCIFSQYGEIIHVELIRDQKTGKSKGFAFLQYEDQRSTVLAVDNLNGATVLGRTIR
Links
Other
RRM
family RBPs
Other
Mucor circinelloides
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PMAA_079770
Penicillium marneffei
PMAA_079770
N
0.789
e_gw1.25.187.1
Phycomyces blakesleeanus
e_gw1.25.187.1
N
0.789
gw1.462.53.1
Capitella teleta
gw1.462.53.1
N
0.789
BDBG_01138
Blastomyces dermatitidis
BDBG_01138
N
0.775
ACLA_012010
Aspergillus clavatus
CADACLAG00000982
N
0.775
ATEG_05773
Aspergillus terreus
CADATEAG00002943
N
0.775
An07g05140
Aspergillus niger
CADANGAG00005786
N
0.775
NFIA_078760
Neosartorya fischeri
CADNFIAG00007376
N
0.775
Pc22g16450
Penicillium chrysogenum
Pc22g16450
N
0.761
fgenesh1_pg.00771_#_290
Aspergillus carbonarius
fgenesh1_pg.00771_#_290
N
0.761
PABG_03870
Paracoccidioides brasiliensis
PABG_03870
N
0.761
GSTUMT00000089001
Tuber melanosporum
GSTUMT00000089001
N
0.761
PredSwiss_CON1238.1
Pneumocystis carinii
PredSwiss_CON1238.1
N
0.761
ANIA_04665
Aspergillus nidulans
CADANIAG00005768
N
0.761
CPSG_07351
Coccidioides posadasii
CPSG_07351
N
0.746
HCAG_00719
Histoplasma capsulatum
HCAG_00719
N
0.746
CIMG_06780
Coccidioides immitis
CIMG_06780
N
0.746
gw1.4.2036.1
Heterobasidion annosum
gw1.4.2036.1
N
0.732
AGAP000977
Anopheles gambiae
AGAP000977
N
0.732
GG21207
Drosophila erecta
FBgn0113387
N
0.732
Rbmx2
Mus musculus
ENSMUSG00000031107
N
0.722
XP_001110036.1
Macaca mulatta
ENSMMUG00000020845
N
0.722
Rbmx2
Rattus norvegicus
ENSRNOG00000007371
N
0.722
ENSMLUG00000017095
Myotis lucifugus
ENSMLUG00000017095
N
0.718
GM17378
Drosophila sechellia
FBgn0172288
N
0.718
ENSLAFG00000028277
Loxodonta africana
ENSLAFG00000028277
N
0.718
ENSCSAVG00000001047
Ciona savignyi
ENSCSAVG00000001047
N
0.718
CG10466
Drosophila melanogaster
FBgn0032822
N
0.718
GK14925
Drosophila willistoni
FBgn0216930
N
0.718
GE13281
Drosophila yakuba
FBgn0230967
N
0.718
TEQG_02324
Trichophyton equinum
TEQG_02324
N
0.718
MCYG_01624
Microsporum canis
MCYG_01624
N
0.718
e_gw1.98.15.1
Volvox carteri
e_gw1.98.15.1
N
0.718
ARB_06649
Arthroderma benhamiae
ARB_06649
N
0.718
GD24233
Drosophila simulans
FBgn0195582
N
0.718
TERG_07863
Trichophyton rubrum
TERG_07863
N
0.718
UREG_03685
Uncinocarpus reesii
UREG_03685
N
0.718
TESG_00774
Trichophyton tonsurans
TESG_00774
N
0.718
TRV_02420
Trichophyton verrucosum
TRV_02420
N
0.718
RBMX2
Macaca mulatta
ENSMMUG00000008389
N
0.708
RBMX2
Tursiops truncatus
ENSTTRG00000016210
N
0.708
RBMX2
Pteropus vampyrus
ENSPVAG00000004425
N
0.708
RBMX2
Spermophilus tridecemlineatus
ENSSTOG00000015391
N
0.708
ENSOGAG00000006237
Otolemur garnettii
ENSOGAG00000006237
N
0.708
LOC100058600
Equus caballus
ENSECAG00000008257
N
0.708
RBMX2
Homo sapiens
ENSG00000134597
N
0.708
Ame_R006638
Ailuropoda melanoleuca
Ame_R006638
N
0.708
LOC100388331
Callithrix jacchus
ENSCJAG00000002436
N
0.708
ENSMLUG00000010298
Myotis lucifugus
ENSMLUG00000010298
N
0.708
RBMX2
Gorilla gorilla
ENSGGOG00000023687
N
0.708
RBMX2
Microcebus murinus
ENSMICG00000015139
N
0.708
RBMX2
Macropus eugenii
ENSMEUG00000010913
N
0.708
BC1G_09608
Botrytis cinerea
BC1G_09608
N
0.704
Bm1_02690
Brugia malayi
Bm1_02690
N
0.704
estExt_Genewise1Plus.C_110324
Daphnia pulex
estExt_Genewise1Plus.C_110324
N
0.704
fgenesh2_pg.C_sca_10000115
Lottia gigantea
fgenesh2_pg.C_sca_10000115
N
0.704
MGYG_04448
Microsporum gypseum
MGYG_04448
N
0.704
estExt_fgenesh1_pg.C_30395
Batrachochytrium dendrobatidis
estExt_fgenesh1_pg.C_30395
N
0.704
gw1.1.945.1
Micromonas pusilla
gw1.1.945.1
N
0.704
RBMX2
Sorex araneus
ENSSARG00000007350
N
0.704
RBMX2
Oryzias latipes
ENSORLG00000013183
N
0.704
rbmx2
Danio rerio
ENSDARG00000044380
N
0.704
estExt_fgenesh2_kg.C_140042
Agaricus bisporus
estExt_fgenesh2_kg.C_140042
N
0.704
nasonia_NCBI_hmm382923
Nasonia vitripennis
nasonia_NCBI_hmm382923
N
0.704
WUBG_13107
Wuchereria bancrofti
WUBG_13107
N
0.704