CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Srsf6
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000016921
T39246_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.760
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.760
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000119065
RRM
4
66
VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVI
ENSMUSP00000119065
RRM
112
177
LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
137 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAG09816
Xenopus laevis
AAG09816
N
0.000
AAH41204
Xenopus laevis
AAH41204
N
0.000
AAH54250
Xenopus laevis
AAH54250
I
0.000
Ame_R005750
Ailuropoda melanoleuca
Ame_R005750
I
0.000
Ame_R011907
Ailuropoda melanoleuca
Ame_R011907
I
0.000
BAA31861
Xenopus laevis
BAA31861
N
0.000
BAB19129
Xenopus laevis
BAB19129
I
0.000
CIRBP
Anolis carolinensis
ENSACAG00000000441
I
0.000
RBM3
Anolis carolinensis
ENSACAG00000013718
I
0.000
Q3SZN4_BOVIN
Bos taurus
ENSBTAG00000007480
I
0.000
ENSCAFG00000015485
Canis familiaris
ENSCAFG00000015485
I
0.000
XM_549003.1
Canis familiaris
ENSCAFG00000016002
I
0.000
CIRBP
Canis familiaris
ENSCAFG00000019506
I
0.000
ENSCAFG00000023295
Canis familiaris
ENSCAFG00000023295
I
0.000
LOC100394350
Callithrix jacchus
ENSCJAG00000005504
I
0.000
RBM3
Cavia porcellus
ENSCPOG00000003553
I
0.000
CIRBP
Cavia porcellus
ENSCPOG00000019403
N
0.000
cirbp
Danio rerio
ENSDARG00000013351
N
0.000
zgc:112425
Danio rerio
ENSDARG00000042049
N
0.000
Rbm3
Dipodomys ordii
ENSDORG00000000182
I
0.000
LOC100051736
Equus caballus
ENSECAG00000024257
I
0.000
RBM3
Felis catus
ENSFCAG00000002245
I
0.000
CIRBP
Homo sapiens
ENSG00000099622
I
0.000
RBM3
Homo sapiens
ENSG00000102317
D
0.000
Q45KQ2_CHICK
Gallus gallus
ENSGALG00000012225
I
0.000
CIRBP
Gorilla gorilla
ENSGGOG00000002338
I
0.000
RBM3
Gorilla gorilla
ENSGGOG00000005864
I
0.000
RBM3
Loxodonta africana
ENSLAFG00000007003
I
0.000
CIRBP
Loxodonta africana
ENSLAFG00000032156
I
0.000
CIRBP
Meleagris gallopavo
ENSMGAG00000010253
I
0.000
CIRBP
Microcebus murinus
ENSMICG00000015962
I
0.000
LOC706175
Macaca mulatta
ENSMMUG00000022101
I
0.000
CIRBP
Monodelphis domestica
ENSMODG00000005290
I
0.000
Rbm3
Mus musculus
ENSMUSG00000031167
I
0.000
Cirbp
Mus musculus
ENSMUSG00000045193
I
0.000
CIRBP
Ornithorhynchus anatinus
ENSOANG00000012230
I
0.000
ENSOCUG00000002271
Oryctolagus cuniculus
ENSOCUG00000002271
I
0.000
ENSPPYG00000020314
Pongo pygmaeus
ENSPPYG00000020314
I
0.000
XR_020876.1
Pan troglodytes
ENSPTRG00000010192
I
0.000
XR_023694.1
Pan troglodytes
ENSPTRG00000021864
I
0.000
CIRBP
Pteropus vampyrus
ENSPVAG00000005629
I
0.000
RBM3
Pteropus vampyrus
ENSPVAG00000015630
I
0.000
Rbm3
Rattus norvegicus
ENSRNOG00000005387
I
0.000
Cirbp
Rattus norvegicus
ENSRNOG00000015999
I
0.000
CIRBP
Sus scrofa
ENSSSCG00000013427
I
0.000
CIRBP
Taeniopygia guttata
ENSTGUG00000000884
I
0.000
RBM3
Tursiops truncatus
ENSTTRG00000008587
I
0.000
CIRBP
Tursiops truncatus
ENSTTRG00000011049
I
0.000
cirbp
Xenopus tropicalis
ENSXETG00000003281
I
0.000
O93235
Xenopus laevis
O93235
N
0.000
Q9DED4
Xenopus laevis
Q9DED4
I
0.000