Srsf6 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000016921 T39246_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000119065 RRM 4 66
ENSMUSP00000119065 RRM 112 177

Links

Other RRM family RBPs
Other Mus musculus RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAG09816 Xenopus laevis AAG09816 N 0.000
AAH41204 Xenopus laevis AAH41204 N 0.000
AAH54250 Xenopus laevis AAH54250 I 0.000
Ame_R005750 Ailuropoda melanoleuca Ame_R005750 I 0.000
Ame_R011907 Ailuropoda melanoleuca Ame_R011907 I 0.000
BAA31861 Xenopus laevis BAA31861 N 0.000
BAB19129 Xenopus laevis BAB19129 I 0.000
CIRBP Anolis carolinensis ENSACAG00000000441 I 0.000
RBM3 Anolis carolinensis ENSACAG00000013718 I 0.000
Q3SZN4_BOVIN Bos taurus ENSBTAG00000007480 I 0.000
ENSCAFG00000015485 Canis familiaris ENSCAFG00000015485 I 0.000
XM_549003.1 Canis familiaris ENSCAFG00000016002 I 0.000
CIRBP Canis familiaris ENSCAFG00000019506 I 0.000
ENSCAFG00000023295 Canis familiaris ENSCAFG00000023295 I 0.000
LOC100394350 Callithrix jacchus ENSCJAG00000005504 I 0.000
RBM3 Cavia porcellus ENSCPOG00000003553 I 0.000
CIRBP Cavia porcellus ENSCPOG00000019403 N 0.000
cirbp Danio rerio ENSDARG00000013351 N 0.000
zgc:112425 Danio rerio ENSDARG00000042049 N 0.000
Rbm3 Dipodomys ordii ENSDORG00000000182 I 0.000
LOC100051736 Equus caballus ENSECAG00000024257 I 0.000
RBM3 Felis catus ENSFCAG00000002245 I 0.000
CIRBP Homo sapiens ENSG00000099622 I 0.000
RBM3 Homo sapiens ENSG00000102317 D 0.000
Q45KQ2_CHICK Gallus gallus ENSGALG00000012225 I 0.000
CIRBP Gorilla gorilla ENSGGOG00000002338 I 0.000
RBM3 Gorilla gorilla ENSGGOG00000005864 I 0.000
RBM3 Loxodonta africana ENSLAFG00000007003 I 0.000
CIRBP Loxodonta africana ENSLAFG00000032156 I 0.000
CIRBP Meleagris gallopavo ENSMGAG00000010253 I 0.000
CIRBP Microcebus murinus ENSMICG00000015962 I 0.000
LOC706175 Macaca mulatta ENSMMUG00000022101 I 0.000
CIRBP Monodelphis domestica ENSMODG00000005290 I 0.000
Rbm3 Mus musculus ENSMUSG00000031167 I 0.000
Cirbp Mus musculus ENSMUSG00000045193 I 0.000
CIRBP Ornithorhynchus anatinus ENSOANG00000012230 I 0.000
ENSOCUG00000002271 Oryctolagus cuniculus ENSOCUG00000002271 I 0.000
ENSPPYG00000020314 Pongo pygmaeus ENSPPYG00000020314 I 0.000
XR_020876.1 Pan troglodytes ENSPTRG00000010192 I 0.000
XR_023694.1 Pan troglodytes ENSPTRG00000021864 I 0.000
CIRBP Pteropus vampyrus ENSPVAG00000005629 I 0.000
RBM3 Pteropus vampyrus ENSPVAG00000015630 I 0.000
Rbm3 Rattus norvegicus ENSRNOG00000005387 I 0.000
Cirbp Rattus norvegicus ENSRNOG00000015999 I 0.000
CIRBP Sus scrofa ENSSSCG00000013427 I 0.000
CIRBP Taeniopygia guttata ENSTGUG00000000884 I 0.000
RBM3 Tursiops truncatus ENSTTRG00000008587 I 0.000
CIRBP Tursiops truncatus ENSTTRG00000011049 I 0.000
cirbp Xenopus tropicalis ENSXETG00000003281 I 0.000
O93235 Xenopus laevis O93235 N 0.000
Q9DED4 Xenopus laevis Q9DED4 I 0.000