CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP1
(
Ornithorhynchus anatinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOANG00000005110
T39475_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
0.922
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000008113
RRM
341
404
LFVGNLPHDVDKAELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDPEPVQKILSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH45051
Xenopus laevis
AAH45051
I
0.828
AAH72830
Xenopus laevis
AAH72830
I
0.812
Ame_R007258
Ailuropoda melanoleuca
Ame_R007258
I
0.761
Ame_R008928
Ailuropoda melanoleuca
Ame_R008928
I
0.922
G3BP2
Anolis carolinensis
ENSACAG00000008695
I
0.776
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.891
Q2KJ17_BOVIN
Bos taurus
ENSBTAG00000014041
I
0.761
G3BP1_BOVIN
Bos taurus
ENSBTAG00000020309
I
0.906
G3BP2
Canis familiaris
ENSCAFG00000008371
I
0.761
G3BP1
Canis familiaris
ENSCAFG00000017841
I
0.922
G3BP2
Choloepus hoffmanni
ENSCHOG00000005346
I
0.731
ENSCHOG00000010802
Choloepus hoffmanni
ENSCHOG00000010802
I
0.906
G3BP1
Callithrix jacchus
ENSCJAG00000015407
I
0.906
LOC100413275
Callithrix jacchus
ENSCJAG00000019897
I
0.761
ENSCPOG00000006626
Cavia porcellus
ENSCPOG00000006626
I
0.906
G3BP2
Cavia porcellus
ENSCPOG00000012052
I
0.761
ENSDARG00000011704
Danio rerio
ENSDARG00000011704
I
0.731
g3bp2
Danio rerio
ENSDARG00000014790
I
0.746
g3bp1
Danio rerio
ENSDARG00000017741
I
0.812
G3BP2
Danio rerio
ENSDARG00000074572
I
0.731
G3BP2
Dasypus novemcinctus
ENSDNOG00000012491
I
0.746
G3BP1
Dasypus novemcinctus
ENSDNOG00000018758
I
0.906
G3bp2
Dipodomys ordii
ENSDORG00000004825
I
0.761
LOC100060090
Equus caballus
ENSECAG00000003368
I
0.906
G3BP2
Equus caballus
ENSECAG00000007917
I
0.761
G3BP1
Erinaceus europaeus
ENSEEUG00000012278
I
0.906
G3BP2
Erinaceus europaeus
ENSEEUG00000013436
I
0.761
G3BP2
Echinops telfairi
ENSETEG00000016219
I
0.716
G3BP1
Echinops telfairi
ENSETEG00000017447
I
0.906
G3BP2
Felis catus
ENSFCAG00000010124
I
0.761
G3BP2
Homo sapiens
ENSG00000138757
D
0.761
G3BP1
Homo sapiens
ENSG00000145907
D
0.922
G3BP1
Gasterosteus aculeatus
ENSGACG00000016848
I
0.844
G3BP2
Gasterosteus aculeatus
ENSGACG00000017342
I
0.746
Q5ZMN1_CHICK
Gallus gallus
ENSGALG00000004160
N
0.859
G3BP2
Gallus gallus
ENSGALG00000010882
I
0.761
G3BP2
Gorilla gorilla
ENSGGOG00000014947
I
0.761
G3BP1
Loxodonta africana
ENSLAFG00000009182
I
0.906
G3BP2
Loxodonta africana
ENSLAFG00000023321
I
0.761
G3BP2
Macropus eugenii
ENSMEUG00000004126
I
0.761
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.984
G3BP2
Meleagris gallopavo
ENSMGAG00000007221
I
0.761
G3BP2
Microcebus murinus
ENSMICG00000007795
I
0.761
G3BP1
Microcebus murinus
ENSMICG00000012235
I
0.922
G3BP1
Myotis lucifugus
ENSMLUG00000001581
I
0.906
G3BP2
Myotis lucifugus
ENSMLUG00000004753
I
0.761
G3BP2
Macaca mulatta
ENSMMUG00000002153
I
0.761
G3BP1
Macaca mulatta
ENSMMUG00000014701
I
0.906
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.906
XM_001367627.1
Monodelphis domestica
ENSMODG00000013903
N
0.817
G3BP2
Monodelphis domestica
ENSMODG00000019205
I
0.761
ENSMODG00000023523
Monodelphis domestica
ENSMODG00000023523
I
0.766
G3bp1
Mus musculus
ENSMUSG00000018583
I
0.875
G3bp2
Mus musculus
ENSMUSG00000029405
I
0.761
ENSOANG00000004714
Ornithorhynchus anatinus
ENSOANG00000004714
I
0.761
G3BP2
Oryctolagus cuniculus
ENSOCUG00000003262
I
0.761
ENSOCUG00000022069
Oryctolagus cuniculus
ENSOCUG00000022069
I
0.906
ENSOCUG00000022143
Oryctolagus cuniculus
ENSOCUG00000022143
I
0.906
G3BP2
Otolemur garnettii
ENSOGAG00000000157
I
0.761
G3BP2
Ochotona princeps
ENSOPRG00000006307
I
0.761
G3BP1
Ochotona princeps
ENSOPRG00000010562
I
0.875
G3BP2
Oryzias latipes
ENSORLG00000007012
I
0.776
G3BP1
Oryzias latipes
ENSORLG00000011422
I
0.812
G3BP2
Procavia capensis
ENSPCAG00000015109
I
0.761
ENSPPYG00000014846
Pongo pygmaeus
ENSPPYG00000014846
I
0.761
ENSPPYG00000015968
Pongo pygmaeus
ENSPPYG00000015968
I
0.922
G3BP2
Pan troglodytes
ENSPTRG00000016175
I
0.761
G3BP1
Pan troglodytes
ENSPTRG00000017438
I
0.922
G3BP2
Pteropus vampyrus
ENSPVAG00000010166
I
0.761
G3BP1
Pteropus vampyrus
ENSPVAG00000017250
I
0.906
G3bp2
Rattus norvegicus
ENSRNOG00000002433
I
0.761
G3bp1
Rattus norvegicus
ENSRNOG00000013186
I
0.891
G3BP2
Sorex araneus
ENSSARG00000009503
I
0.761
ENSSSCG00000017079
Sus scrofa
ENSSSCG00000017079
I
0.906
ENSSSCG00000017080
Sus scrofa
ENSSSCG00000017080
I
0.906
G3BP1
Spermophilus tridecemlineatus
ENSSTOG00000015928
I
0.797
G3BP1
Tupaia belangeri
ENSTBEG00000004386
I
0.906
ENSTBEG00000008258
Tupaia belangeri
ENSTBEG00000008258
I
0.746
ENSTBEG00000012323
Tupaia belangeri
ENSTBEG00000012323
I
0.761
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.984
G3BP2
Taeniopygia guttata
ENSTGUG00000001561
I
0.761
G3BP2
Tetraodon nigroviridis
ENSTNIG00000011044
I
0.761
G3BP1
Tetraodon nigroviridis
ENSTNIG00000012954
I
0.828
G3BP2
Takifugu rubripes
ENSTRUG00000011405
I
0.746
G3BP1
Tarsius syrichta
ENSTSYG00000004570
I
0.922
G3BP2
Tursiops truncatus
ENSTTRG00000013795
I
0.746
G3BP1
Vicugna pacos
ENSVPAG00000004461
I
0.906
G3BP2
Vicugna pacos
ENSVPAG00000010710
I
0.761
g3bp2
Xenopus tropicalis
ENSXETG00000000334
I
0.731
g3bp1
Xenopus tropicalis
ENSXETG00000010712
I
0.891