CELF3 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000001919 T42008_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000004304 RRM 87 157

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.761
AAEL003979 Aedes aegypti AAEL003979 I 0.887
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.817
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.915
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.930
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.831
BRUNOL6 Homo sapiens ENSG00000140488 D 0.873
CELF3 Homo sapiens ENSG00000159409 I 0.944
HEXA Macaca mulatta ENSMMUG00000010687 I 0.873
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.901
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.930
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.873
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.958
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.746
GF19661 Drosophila ananassae FBgn0096668 I 0.761
GG23781 Drosophila erecta FBgn0115920 I 0.761
GI17947 Drosophila mojavensis FBgn0140687 I 0.746
GM26796 Drosophila sechellia FBgn0181649 I 0.761
GD23834 Drosophila simulans FBgn0195204 I 0.761
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.930
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.915
ISCW008885 Ixodes scapularis ISCW008885 I 0.789
ISCW010799 Ixodes scapularis ISCW010799 I 0.915
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.915
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.704
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.761
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.859