CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF3
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000001919
T42008_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.761
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000004304
RRM
87
157
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_10000359
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_10000359
N
0.000
fgenesh1_pg.C_scaffold_12000004
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_12000004
N
0.000
fgenesh1_pg.C_scaffold_12000135
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_12000135
N
0.000
fgenesh1_pg.C_scaffold_14000124
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_14000124
N
0.000
fgenesh1_pg.C_scaffold_19000085
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_19000085
N
0.000
fgenesh1_pg.C_scaffold_2000195
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000195
N
0.000
fgenesh1_pg.C_scaffold_2000541
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000541
N
0.000
fgenesh1_pg.C_scaffold_2000792
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000792
N
0.000
fgenesh1_pg.C_scaffold_24000066
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_24000066
N
0.000
fgenesh1_pg.C_scaffold_25000050
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_25000050
N
0.000
fgenesh1_pg.C_scaffold_3000375
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_3000375
N
0.000
fgenesh1_pg.C_scaffold_3000432
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_3000432
N
0.000
fgenesh1_pg.C_scaffold_3000511
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_3000511
N
0.000
fgenesh1_pg.C_scaffold_37000002
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_37000002
N
0.000
fgenesh1_pg.C_scaffold_4000057
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_4000057
N
0.000
fgenesh1_pg.C_scaffold_4000575
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_4000575
N
0.000
fgenesh1_pg.C_scaffold_5000015
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_5000015
N
0.000
fgenesh1_pg.C_scaffold_65000002
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_65000002
N
0.000
fgenesh1_pg.C_scaffold_70000003
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_70000003
N
0.000
fgenesh1_pg.C_scaffold_7000595
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_7000595
N
0.000
fgenesh1_pg.C_scaffold_79000001
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_79000001
N
0.000
fgenesh1_pg.C_scaffold_79000002
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_79000002
N
0.000