CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF3
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000001919
T42008_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.761
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000004304
RRM
87
157
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSXETG00000021745
Xenopus tropicalis
ENSXETG00000021745
I
0.958
CELF3
Homo sapiens
ENSG00000159409
I
0.944
fgenesh2_pm.scaffold_186000008
Branchiostoma floridae
fgenesh2_pm.scaffold_186000008
I
0.930
CELF6
Anolis carolinensis
ENSACAG00000006079
I
0.930
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.930
NCBI_GNO_268900001
Daphnia pulex
NCBI_GNO_268900001
I
0.915
BGIBMGA005893
Bombyx mori
BGIBMGA005893
I
0.915
gw1.77.52.1
Daphnia pulex
gw1.77.52.1
I
0.915
ISCW010799
Ixodes scapularis
ISCW010799
I
0.915
CELF5
Macaca mulatta
ENSMMUG00000015513
I
0.901
AAEL003979
Aedes aegypti
AAEL003979
I
0.887
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.873
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.873
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.873
WUBG_04928
Wuchereria bancrofti
WUBG_04928
I
0.859
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.831
amel4_ncbi_hmm2201
Apis mellifera
amel4_ncbi_hmm2201
I
0.817
ISCW008885
Ixodes scapularis
ISCW008885
I
0.789
136083
Helobdella robusta
136083
I
0.761
GF19661
Drosophila ananassae
FBgn0096668
I
0.761
SNAPOd2T00007754001
Oikopleura dioica
SNAPOd2T00007754001
I
0.761
GM26796
Drosophila sechellia
FBgn0181649
I
0.761
GG23781
Drosophila erecta
FBgn0115920
I
0.761
GD23834
Drosophila simulans
FBgn0195204
I
0.761
e_gw.982.9.1
Nematostella vectensis
e_gw.982.9.1
I
0.746
GI17947
Drosophila mojavensis
FBgn0140687
I
0.746
Ppa-etr-1
Pristionchus pacificus
PPA28330
I
0.704