LOC100391960 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000020663 T35684_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.803
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000038419 RRM 197 267
ENSCJAP00000038428 RRM 26 97
ENSCJAP00000038428 RRM 118 186
ENSCJAP00000038428 RRM 413 483
ENSCJAP00000038429 RRM 42 113
ENSCJAP00000038429 RRM 134 202
ENSCJAP00000038429 RRM 431 501
ENSCJAP00000038438 RRM 18 89
ENSCJAP00000038438 RRM 110 178
ENSCJAP00000038438 RRM 407 477
ENSCJAP00000038439 RRM 23 91
ENSCJAP00000038439 RRM 320 390
ENSCJAP00000046502 RRM 23 91
ENSCJAP00000046502 RRM 332 402

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF2 Tupaia belangeri ENSTBEG00000007939 N 1.000
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 1.000
CUGBP2-1 Taeniopygia guttata ENSTGUG00000002136 N 1.000
CELF2 Microcebus murinus ENSMICG00000007867 N 1.000
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 1.000
Cugbp2 Rattus norvegicus ENSRNOG00000023661 N 1.000
CELF2 Canis familiaris ENSCAFG00000004973 N 1.000
CELF2 Ochotona princeps ENSOPRG00000011502 N 1.000
CELF2 Gorilla gorilla ENSGGOG00000009330 I 1.000
ENSPPYG00000002083 Pongo pygmaeus ENSPPYG00000002083 N 1.000
CELF2_CHICK Gallus gallus ENSGALG00000006713 N 1.000
CELF2 Pan troglodytes ENSPTRG00000002284 N 1.000
CELF2 Anolis carolinensis ENSACAG00000007661 N 1.000
CELF2 Homo sapiens ENSG00000048740 N 1.000
CELF2 Oryctolagus cuniculus ENSOCUG00000004961 N 1.000
Celf2 Mus musculus ENSMUSG00000002107 N 1.000
CELF2 Macaca mulatta ENSMMUG00000011468 N 1.000
CELF2 Cavia porcellus ENSCPOG00000012567 N 1.000
CELF2 Equus caballus ENSECAG00000006649 N 1.000
Ame_R017712 Ailuropoda melanoleuca Ame_R017712 N 1.000
CELF2 Loxodonta africana ENSLAFG00000013612 N 1.000
CELF2 Erinaceus europaeus ENSEEUG00000005658 N 1.000
Q7ZXE2 Xenopus laevis Q7ZXE2 N 0.995
AAB09041 Xenopus laevis AAB09041 N 0.995
celf2 Xenopus tropicalis ENSXETG00000021992 N 0.995
AAH45035 Xenopus laevis AAH45035 N 0.995
CELF2 Tetraodon nigroviridis ENSTNIG00000007201 N 0.972
CELF2 Takifugu rubripes ENSTRUG00000010147 N 0.972
celf2 Danio rerio ENSDARG00000002131 N 0.972
ACH69783 Xenopus laevis ACH69783 N 0.958
CELF2 Choloepus hoffmanni ENSCHOG00000002945 N 0.944
CELF1 Anolis carolinensis ENSACAG00000002114 N 0.925
CELF1 Monodelphis domestica ENSMODG00000019913 N 0.925
CUGBP1 Taeniopygia guttata ENSTGUG00000010377 N 0.925
CELF1_CHICK Gallus gallus ENSGALG00000008097 N 0.925
CELF1 Macropus eugenii ENSMEUG00000007763 N 0.925
CELF1 Meleagris gallopavo ENSMGAG00000010629 N 0.925
CELF1 Ornithorhynchus anatinus ENSOANG00000007896 N 0.920
CELF1 Tursiops truncatus ENSTTRG00000014157 N 0.915
CELF1 Loxodonta africana ENSLAFG00000003484 N 0.915
CELF1 Oryctolagus cuniculus ENSOCUG00000001311 N 0.915
LOC100392717 Callithrix jacchus ENSCJAG00000020133 N 0.915
A7MB95_BOVIN Bos taurus ENSBTAG00000002520 N 0.915
CELF1 Homo sapiens ENSG00000149187 N 0.915
CELF1 Cavia porcellus ENSCPOG00000007871 N 0.915
CELF1 Vicugna pacos ENSVPAG00000000336 N 0.915
CELF1 Equus caballus ENSECAG00000007741 N 0.915
CELF1 Canis familiaris ENSCAFG00000008452 N 0.915
CELF1 Macaca mulatta ENSMMUG00000011657 N 0.915
Ame_R009875 Ailuropoda melanoleuca Ame_R009875 N 0.915
Cugbp1 Rattus norvegicus ENSRNOG00000010379 N 0.906
ENSPPYG00000003302 Pongo pygmaeus ENSPPYG00000003302 N 0.906
O57406 Xenopus laevis O57406 N 0.906
AAI08575 Xenopus laevis AAI08575 N 0.906
CELF1 Takifugu rubripes ENSTRUG00000001711 N 0.906
AAC41243 Xenopus laevis AAC41243 N 0.906
celf1 Xenopus tropicalis ENSXETG00000009044 N 0.906
Celf1 Mus musculus ENSMUSG00000005506 N 0.906
Celf1 Dipodomys ordii ENSDORG00000013721 N 0.901
CELF1 Ochotona princeps ENSOPRG00000003239 N 0.901
CELF2 Gasterosteus aculeatus ENSGACG00000004426 N 0.897
celf1 Danio rerio ENSDARG00000005315 N 0.896
CELF2 Tetraodon nigroviridis ENSTNIG00000016009 N 0.892
CELF2 Oryzias latipes ENSORLG00000003894 N 0.892
AAH70706 Xenopus laevis AAH70706 N 0.892
AAH57743 Xenopus laevis AAH57743 N 0.892
Q6PF35 Xenopus laevis Q6PF35 N 0.892
CELF2 Takifugu rubripes ENSTRUG00000016905 N 0.887
CELF1 Procavia capensis ENSPCAG00000002631 N 0.882
ISCW008885 Ixodes scapularis ISCW008885 I 0.873
ISCW010799 Ixodes scapularis ISCW010799 I 0.873
CELF1 Microcebus murinus ENSMICG00000007157 N 0.873
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.859
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.859
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.857
CELF2 Procavia capensis ENSPCAG00000010882 N 0.849
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.845
AAEL003979 Aedes aegypti AAEL003979 I 0.845
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.845
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.845
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.845
136083 Helobdella robusta 136083 I 0.845
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.845
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.845
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.845
CELF2 Macropus eugenii ENSMEUG00000015276 N 0.844
GD23834 Drosophila simulans FBgn0195204 I 0.831
CELF3 Homo sapiens ENSG00000159409 I 0.831
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.831
GF19661 Drosophila ananassae FBgn0096668 I 0.831
GG23781 Drosophila erecta FBgn0115920 I 0.831
GM26796 Drosophila sechellia FBgn0181649 I 0.831
CELF2 Tursiops truncatus ENSTTRG00000014665 N 0.830
GI17947 Drosophila mojavensis FBgn0140687 I 0.817
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.817
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.817
CELF1 Gasterosteus aculeatus ENSGACG00000014226 N 0.812
CELF2 Monodelphis domestica ENSMODG00000016763 N 0.802
Celf2 Dipodomys ordii ENSDORG00000006455 N 0.798
e_gw.91.28.1 Branchiostoma floridae e_gw.91.28.1 I 0.797
CELF2 Vicugna pacos ENSVPAG00000009360 N 0.797
CELF2 Tarsius syrichta ENSTSYG00000005118 N 0.797
CELF2 Oryzias latipes ENSORLG00000017111 N 0.789
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.789
BRUNOL6 Homo sapiens ENSG00000140488 D 0.789
HEXA Macaca mulatta ENSMMUG00000010687 I 0.789
CELF1 Sorex araneus ENSSARG00000003207 N 0.788
CELF1 Erinaceus europaeus ENSEEUG00000009782 N 0.788
CELF1 Pan troglodytes ENSPTRG00000003568 N 0.788
CELF1 Tupaia belangeri ENSTBEG00000005140 N 0.778
CELF2 Echinops telfairi ENSETEG00000008414 N 0.776
CELF1 Choloepus hoffmanni ENSCHOG00000004196 N 0.775
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.775
CELF1 Dasypus novemcinctus ENSDNOG00000009523 N 0.774
CELF1 Myotis lucifugus ENSMLUG00000016631 N 0.765
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.761
etr-1 Caenorhabditis elegans T01D1.2 D 0.746
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.743
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.743
CELF1 Tarsius syrichta ENSTSYG00000003866 N 0.741
CELF1 Pteropus vampyrus ENSPVAG00000007340 N 0.741
CELF1 Gorilla gorilla ENSGGOG00000004106 N 0.737
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.736
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.736
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.729
GM24582 Drosophila sechellia FBgn0179445 I 0.729
GH14684 Drosophila grimshawi FBgn0122160 I 0.729
GI13095 Drosophila mojavensis FBgn0135852 I 0.729
PHUM315130 Pediculus humanus PHUM315130 I 0.729
GG13757 Drosophila erecta FBgn0106020 I 0.729
GF10965 Drosophila ananassae FBgn0088005 I 0.729
GJ13842 Drosophila virilis FBgn0201061 I 0.729
GD12651 Drosophila simulans FBgn0184378 I 0.729
bru-3 Drosophila melanogaster FBgn0262350 D 0.729
GK17101 Drosophila willistoni FBgn0219100 I 0.729
GE20053 Drosophila yakuba FBgn0237378 I 0.729
CELF6 Oryzias latipes ENSORLG00000013392 I 0.721
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.721
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.721
AAEL014033 Aedes aegypti AAEL014033 I 0.721
LOAG_05508 Loa loa LOAG_05508 I 0.721
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.721
CELF2 Meleagris gallopavo ENSMGAG00000004551 N 0.721
AGAP004950 Anopheles gambiae AGAP004950 I 0.721
GL21647 Drosophila persimilis FBgn0159240 I 0.721
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.721
AAEL000695 Aedes aegypti AAEL000695 I 0.721
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.721
CELF1 Takifugu rubripes ENSTRUG00000000617 N 0.718
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.714
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.714
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.714
ENSCING00000003762 Ciona intestinalis ENSCING00000003762 N 0.709
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.707
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.707
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.707
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.707
Smp_041280 Schistosoma mansoni Smp_041280 I 0.707
e_gw1.172.82.1 Capitella teleta e_gw1.172.82.1 I 0.705
DGIL_AUG5s6024g1t1 Acyrtosiphon pisum DGIL_AUG5s6024g1t1 N 0.704
90208 Helobdella robusta 90208 I 0.702
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.700
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.700
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.700
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.700
CELF2 Sus scrofa ENSSSCG00000011121 N 0.700