CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GI20446
(
Drosophila mojavensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0143182
T43635_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0169663
RRM
103
168
VSALPPKAPDEFIEETLYREYKKFGDFSVRLAHDLDERVAYVCFRTPEDAREAKHHKPRLIIYDKM
FBpp0169663
RRM
317
386
LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCK
FBpp0169663
RRM
398
461
IWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPER
Links
Other
RRM
family RBPs
Other
Drosophila mojavensis
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA05016
Caenorhabditis japonica
CJA05016
N
0.000
CJA17358
Caenorhabditis japonica
CJA17358
N
0.000
CJA19095
Caenorhabditis japonica
CJA19095
N
0.000
Genemark.10526_g
Serpula lacrymans
Genemark.10526_g
N
0.000
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.000
Genemark.3014_g
Serpula lacrymans
Genemark.3014_g
N
0.000
Genemark.4174_g
Serpula lacrymans
Genemark.4174_g
N
0.000
Genemark.8306_g
Serpula lacrymans
Genemark.8306_g
N
0.000
LOC_Os02g44180
Oryza sativa
LOC_Os02g44180
N
0.000
LOC_Os03g44360
Oryza sativa
LOC_Os03g44360
N
0.000
LOC_Os04g43950
Oryza sativa
LOC_Os04g43950
N
0.000
LOC_Os06g31350
Oryza sativa
LOC_Os06g31350
N
0.000
LOC_Os07g15080
Oryza sativa
LOC_Os07g15080
N
0.000
LOC_Os07g17090
Oryza sativa
LOC_Os07g17090
N
0.000
LOC_Os10g06430
Oryza sativa
LOC_Os10g06430
N
0.000
LOC_Os11g18620
Oryza sativa
LOC_Os11g18620
N
0.000
LOC_Os11g19910
Oryza sativa
LOC_Os11g19910
N
0.000
LOC_Os11g38820
Oryza sativa
LOC_Os11g38820
N
0.000
LOC_Os11g39950
Oryza sativa
LOC_Os11g39950
N
0.000
LOC_Os12g33260
Oryza sativa
LOC_Os12g33260
N
0.000
PITG_22277
Phytophthora infestans
PITG_22277
N
0.000
Sb04g021900
Sorghum bicolor
Sb04g021900
N
0.000