CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM308070
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM308070
T45345_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM308070-PA
RRM
91
160
LCVSALHPKASNELIKDTLYREYKRFGDITIRISHDIEQERVAYVCFRSWEDARDAKHSKPRIVIYDKVA
PHUM308070-PA
RRM
326
395
LFAGNLEINISEEELRRIFERYGIVEDIDIKRPPPGTGNAFAFVRFQNLDMAHRSKVELSGQYIGKFQCK
PHUM308070-PA
RRM
407
471
IWVGGLGQWTSIQQLEREFDRFGAIKKIDYIKGDNSAYIQYDSIDAAQAAVKEMRGFPLGGMEHR
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.820
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.810
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.796
CPIJ002280
Culex quinquefasciatus
CPIJ002280
N
0.795
AGAP005127
Anopheles gambiae
AGAP005127
N
0.795
CpipJ_CPIJ002280
Culex pipiens
CpipJ_CPIJ002280
N
0.795
DGIL_AUG5s14548g2t1
Acyrtosiphon pisum
DGIL_AUG5s14548g2t1
N
0.780
DGIL_AUG5s1025g3t1
Acyrtosiphon pisum
DGIL_AUG5s1025g3t1
N
0.751
GK10751
Drosophila willistoni
FBgn0212763
N
0.746
GF13651
Drosophila ananassae
FBgn0090679
N
0.741
GI20446
Drosophila mojavensis
FBgn0143182
N
0.737
GJ20116
Drosophila virilis
FBgn0207256
N
0.732
GM20997
Drosophila sechellia
FBgn0175878
N
0.727
GD10528
Drosophila simulans
FBgn0182299
N
0.727
GE19164
Drosophila yakuba
FBgn0236524
N
0.727
GA15511-RA
Drosophila pseudoobscura
FBgn0075528
N
0.727
nito
Drosophila melanogaster
FBgn0027548
N
0.727
GL11478
Drosophila persimilis
FBgn0149087
N
0.727
GG23320
Drosophila erecta
FBgn0115471
N
0.727
DGIL_AUG5s12809g1t1
Acyrtosiphon pisum
DGIL_AUG5s12809g1t1
N
0.722
GH20604
Drosophila grimshawi
FBgn0128067
N
0.722