CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH20604
(
Drosophila grimshawi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0128067
T43527_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0154510
RRM
103
168
VSALPPKAPDEFIEETLYREYKKFGDFSVRLAHDLDERVAYVCFRTPEDAREAKHHKPRLIIYDKM
FBpp0154510
RRM
317
386
LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCK
FBpp0154510
RRM
398
461
MWIGGLGAWTSVTQIEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATSAVKEMRGFPLGGPER
Links
Other
RRM
family RBPs
Other
Drosophila grimshawi
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GJ20116
Drosophila virilis
FBgn0207256
N
0.990
GG23320
Drosophila erecta
FBgn0115471
N
0.985
nito
Drosophila melanogaster
FBgn0027548
N
0.985
GI20446
Drosophila mojavensis
FBgn0143182
N
0.985
GE19164
Drosophila yakuba
FBgn0236524
N
0.985
GM20997
Drosophila sechellia
FBgn0175878
N
0.985
GD10528
Drosophila simulans
FBgn0182299
N
0.985
GF13651
Drosophila ananassae
FBgn0090679
N
0.970
GL11478
Drosophila persimilis
FBgn0149087
N
0.965
GA15511-RA
Drosophila pseudoobscura
FBgn0075528
N
0.965
GK10751
Drosophila willistoni
FBgn0212763
N
0.965
AGAP005127
Anopheles gambiae
AGAP005127
N
0.793
CPIJ002280
Culex quinquefasciatus
CPIJ002280
N
0.787
CpipJ_CPIJ002280
Culex pipiens
CpipJ_CPIJ002280
N
0.787
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.771
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.741
DGIL_AUG5s14548g2t1
Acyrtosiphon pisum
DGIL_AUG5s14548g2t1
N
0.734
DGIL_AUG5s1025g3t1
Acyrtosiphon pisum
DGIL_AUG5s1025g3t1
N
0.724
PHUM308070
Pediculus humanus
PHUM308070
N
0.722
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.721