CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF13651
(
Drosophila ananassae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0090679
T43224_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0116843
RRM
85
150
VSALPPKAPDEFIEETLYREYKKFGDFSVRLAHDLEERVAYVCFRTPEDAREAKHHKPRLIIYDKM
FBpp0116843
RRM
297
366
LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCK
FBpp0116843
RRM
378
441
IWVGGLGAWTSVTQLEREFDRFGVIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPER
Links
Other
RRM
family RBPs
Other
Drosophila ananassae
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI20446
Drosophila mojavensis
FBgn0143182
N
0.985
GJ20116
Drosophila virilis
FBgn0207256
N
0.980
nito
Drosophila melanogaster
FBgn0027548
N
0.975
GE19164
Drosophila yakuba
FBgn0236524
N
0.975
GG23320
Drosophila erecta
FBgn0115471
N
0.975
GD10528
Drosophila simulans
FBgn0182299
N
0.975
GM20997
Drosophila sechellia
FBgn0175878
N
0.975
GH20604
Drosophila grimshawi
FBgn0128067
N
0.970
GA15511-RA
Drosophila pseudoobscura
FBgn0075528
N
0.955
GL11478
Drosophila persimilis
FBgn0149087
N
0.955
GK10751
Drosophila willistoni
FBgn0212763
N
0.955
AGAP005127
Anopheles gambiae
AGAP005127
N
0.803
CPIJ002280
Culex quinquefasciatus
CPIJ002280
N
0.797
CpipJ_CPIJ002280
Culex pipiens
CpipJ_CPIJ002280
N
0.797
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.776
DGIL_AUG5s14548g2t1
Acyrtosiphon pisum
DGIL_AUG5s14548g2t1
N
0.764
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.751
DGIL_AUG5s1025g3t1
Acyrtosiphon pisum
DGIL_AUG5s1025g3t1
N
0.744
PHUM308070
Pediculus humanus
PHUM308070
N
0.741
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.730
DGIL_AUG5s12809g1t1
Acyrtosiphon pisum
DGIL_AUG5s12809g1t1
N
0.704