CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s14548g2t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s14548g2t1
T32013_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s14548g2t1
RRM
93
160
LCVSALHPKASDEQVKETLYREYRKFGEFSVRISHELEERVAYVCFRSSDDARDAKHSKPRISLFDKI
DGIL_AUG5s14548g2t1
RRM
315
384
LFAGNLEISISDEELRRIFGRYGVVEDIDVKRPLPGTGNAYAFVRYQNLDMAHRAKVELSGQYLGKFQCK
DGIL_AUG5s14548g2t1
RRM
396
460
IWVGGLGPWTSLAQLEREFDRFGVIKKIEYVKGDICAYIQFESIDAATAAVKEMRGVALGGPEHK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s1025g3t1
Acyrtosiphon pisum
DGIL_AUG5s1025g3t1
N
0.956
DGIL_AUG5s12809g1t1
Acyrtosiphon pisum
DGIL_AUG5s12809g1t1
N
0.901
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.799
AGAP005127
Anopheles gambiae
AGAP005127
N
0.789
PHUM308070
Pediculus humanus
PHUM308070
N
0.780
CpipJ_CPIJ002280
Culex pipiens
CpipJ_CPIJ002280
N
0.770
CPIJ002280
Culex quinquefasciatus
CPIJ002280
N
0.770
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.766
GF13651
Drosophila ananassae
FBgn0090679
N
0.764
GK10751
Drosophila willistoni
FBgn0212763
N
0.759
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.755
GA15511-RA
Drosophila pseudoobscura
FBgn0075528
N
0.750
GL11478
Drosophila persimilis
FBgn0149087
N
0.750
GI20446
Drosophila mojavensis
FBgn0143182
N
0.749
GJ20116
Drosophila virilis
FBgn0207256
N
0.744
GM20997
Drosophila sechellia
FBgn0175878
N
0.739
GG23320
Drosophila erecta
FBgn0115471
N
0.739
GE19164
Drosophila yakuba
FBgn0236524
N
0.739
GD10528
Drosophila simulans
FBgn0182299
N
0.739
nito
Drosophila melanogaster
FBgn0027548
N
0.739
GH20604
Drosophila grimshawi
FBgn0128067
N
0.734