CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP005127
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP005127
T32507_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP005127-PA
RRM
99
167
LCVSALHPKASEEFIKETLYREYKKFGDFSIRISHDLDERLAYVCFRTPEDAREAKHAKSRIILHDKVA
AGAP005127-PA
RRM
307
376
LFAGNLEINISDDELRRIFGKYGLVEDIDIKRPAPGTGNAFAFVRYQTLDMAHRAKVELSGQYIGKFQCK
AGAP005127-PA
RRM
388
450
IWVGGLGAWTSVTQLEREFDRFGAIKKIEYAKGDTQAFILYDSIDAATAAVKEMRGFALGGPD
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ002280
Culex quinquefasciatus
CPIJ002280
N
0.906
CpipJ_CPIJ002280
Culex pipiens
CpipJ_CPIJ002280
N
0.906
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.833
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.817
GI20446
Drosophila mojavensis
FBgn0143182
N
0.808
GJ20116
Drosophila virilis
FBgn0207256
N
0.803
GF13651
Drosophila ananassae
FBgn0090679
N
0.803
GK10751
Drosophila willistoni
FBgn0212763
N
0.798
GE19164
Drosophila yakuba
FBgn0236524
N
0.798
GG23320
Drosophila erecta
FBgn0115471
N
0.798
GD10528
Drosophila simulans
FBgn0182299
N
0.798
nito
Drosophila melanogaster
FBgn0027548
N
0.798
GM20997
Drosophila sechellia
FBgn0175878
N
0.798
PHUM308070
Pediculus humanus
PHUM308070
N
0.795
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.793
GH20604
Drosophila grimshawi
FBgn0128067
N
0.793
GL11478
Drosophila persimilis
FBgn0149087
N
0.793
GA15511-RA
Drosophila pseudoobscura
FBgn0075528
N
0.793
DGIL_AUG5s14548g2t1
Acyrtosiphon pisum
DGIL_AUG5s14548g2t1
N
0.789
DGIL_AUG5s1025g3t1
Acyrtosiphon pisum
DGIL_AUG5s1025g3t1
N
0.765
DGIL_AUG5s12809g1t1
Acyrtosiphon pisum
DGIL_AUG5s12809g1t1
N
0.730