estExt_Genewise1Plus.C_150014 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_150014 T51384_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_150014 RRM 11 80
estExt_Genewise1Plus.C_150014 RRM 112 182
estExt_Genewise1Plus.C_150014 RRM 287 341

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL005046 Aedes aegypti AAEL005046 N 0.801
AAH75146 Xenopus laevis AAH75146 N 0.759
AAH77813 Xenopus laevis AAH77813 N 0.744
AGAP008433 Anopheles gambiae AGAP008433 N 0.792
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.832
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.764
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.808
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.808
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.808
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.808
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.770
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.768
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.764
RBM39 Canis familiaris ENSCAFG00000008327 N 0.764
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.764
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.700
rbm39a Danio rerio ENSDARG00000011613 N 0.751
rbm39b Danio rerio ENSDARG00000041853 N 0.756
RBM39 Equus caballus ENSECAG00000013423 N 0.764
RBM39 Homo sapiens ENSG00000131051 N 0.764
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.734
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.736
RBM39 Gallus gallus ENSGALG00000001550 N 0.768
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.749
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.764
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.763
RBM39 Microcebus murinus ENSMICG00000001668 N 0.764
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.756
Rbm39 Mus musculus ENSMUSG00000027620 N 0.764
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.764
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.729
RBM23 Oryzias latipes ENSORLG00000009919 N 0.766
RBM23 Oryzias latipes ENSORLG00000010370 N 0.773
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.764
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.764
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.764
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.764
RBM39 Sorex araneus ENSSARG00000007673 N 0.764
RBM39 Sus scrofa ENSSSCG00000007309 N 0.764
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.768
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.777
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.777
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.764
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.764
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.754
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.749
CG11266 Drosophila melanogaster FBgn0031883 N 0.793
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.798
GF14957 Drosophila ananassae FBgn0091982 N 0.793
GG10454 Drosophila erecta FBgn0102763 N 0.798
GH13506 Drosophila grimshawi FBgn0120982 N 0.775
GI10246 Drosophila mojavensis FBgn0133011 N 0.804
GM16278 Drosophila sechellia FBgn0171194 N 0.793
GD23448 Drosophila simulans FBgn0194830 N 0.793
GJ18017 Drosophila virilis FBgn0205182 N 0.791
GK15272 Drosophila willistoni FBgn0217277 N 0.794
GE14328 Drosophila yakuba FBgn0231943 N 0.798
PHUM394230 Pediculus humanus PHUM394230 N 0.802