CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_150014
(
Daphnia pulex
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_150014
T51384_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_150014
RRM
11
80
VFCMQLSQRIRARDLEEFFSAVGKVRDVRLITCNKTRRFKGLCYVEFAEPESVPLAIALTGQRLCGVPIV
estExt_Genewise1Plus.C_150014
RRM
112
182
LYVGSLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITFRNAEDAKKAMEQLNGFELAGRPMK
estExt_Genewise1Plus.C_150014
RRM
287
341
DDVMDECNKHGGVLHIYVDKASPQGNVYVKCPSVTVAVNAVNALHGRWFAGRIIT
Links
Other
RRM
family RBPs
Other
Daphnia pulex
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
C_scaffold_35000023
Phytophthora ramorum
C_scaffold_35000023
N
0.000
PITG_11179
Phytophthora infestans
PITG_11179
N
0.000
s_469761
Phytophthora sojae
s_469761
N
0.000