fgenesh2_pg.scaffold_240000061 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_240000061 T52237_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF2
M070_0.6 		Homo sapiens GGAGWD RNAcompete
Ray et al.(2013)
RNCMPT00072 		0.817
SRSF2
M352_0.6 		Homo sapiens AGSAGAGUA SELEX
Cook et al.(2011)
953_7543047 		0.817
SRSF2
M332_0.6 		Homo sapiens UGUUCSAGWU SELEX
Cook et al.(2011)
791_10094314 		0.817
SRSF2
M274_0.6 		Homo sapiens GUUCGAGUA SELEX
Cook et al.(2011)
244_7543047 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_240000061 RRM 16 86

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29827.m002610 Ricinus communis 29827.m002610 N 0.000
29986.m001610 Ricinus communis 29986.m001610 N 0.000
30128.m008837 Ricinus communis 30128.m008837 N 0.000
30128.m008840 Ricinus communis 30128.m008840 N 0.000
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.000
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.000
At-SR34a Arabidopsis thaliana AT3G49430-TAIR-G N 0.000
SR34b Arabidopsis thaliana AT4G02430-TAIR-G N 0.000
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.000
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.000
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.000
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.000
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.000
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.000
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.000
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.000
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.000
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.000
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.000
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.000
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.000
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.000
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.000
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.000
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.000
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.000
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.000
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.000
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.000
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.000
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.000
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.000
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.000
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.000
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.000
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.000
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.000
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.000
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.000
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.000
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.000
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.000
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.000
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.000
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.000
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.000
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.000
GSVIVG00038636001 Vitis vinifera GSVIVG00038636001 N 0.000
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.000
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.000
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.000
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.000
MDP0000200391 Malus x domestica MDP0000200391 N 0.000
MDP0000231034 Malus x domestica MDP0000231034 N 0.000
MDP0000268577 Malus x domestica MDP0000268577 N 0.000
MDP0000271362 Malus x domestica MDP0000271362 N 0.000
MDP0000857322 Malus x domestica MDP0000857322 N 0.000
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.000
Medtr3g122850 Medicago truncatula Medtr3g122850 N 0.000
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.000
mgf000052m Mimulus guttatus mgf000052m N 0.000
mgf007149m Mimulus guttatus mgf007149m N 0.000
mgf007835m Mimulus guttatus mgf007835m N 0.000
mgf011321m Mimulus guttatus mgf011321m N 0.000
mgf014175m Mimulus guttatus mgf014175m N 0.000
PK08657.1 Cannabis sativa PK08657.1 N 0.000
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.000
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.000
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.000
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.000
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.000
B9IDH4_POPTR Populus trichocarpa POPTR_0015s00690 N 0.000
ppa009033m Prunus persica ppa009033m N 0.000
ppa009045m Prunus persica ppa009045m N 0.000
ppa009360m Prunus persica ppa009360m N 0.000
ppa009968m Prunus persica ppa009968m N 0.000
ppa017674m Prunus persica ppa017674m N 0.000
SB01G035680 Sorghum bicolor Sb01g035680 N 0.000
SB03G013010 Sorghum bicolor Sb03g013010 N 0.000
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.000
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.000