fgenesh2_pm.scaffold_186000008 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pm.scaffold_186000008 T52292_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.scaffold_186000008 RRM 81 151

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.803
AAEL003979 Aedes aegypti AAEL003979 I 0.944
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.803
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.958
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.972
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.859
BRUNOL6 Homo sapiens ENSG00000140488 D 0.901
CELF3 Homo sapiens ENSG00000159409 I 0.901
HEXA Macaca mulatta ENSMMUG00000010687 I 0.901
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.915
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.972
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.901
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.930
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.901
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.789
GF19661 Drosophila ananassae FBgn0096668 I 0.761
GG23781 Drosophila erecta FBgn0115920 I 0.761
GI17947 Drosophila mojavensis FBgn0140687 I 0.746
GM26796 Drosophila sechellia FBgn0181649 I 0.761
GD23834 Drosophila simulans FBgn0195204 I 0.761
GRMZM2G128809 Zea mays GRMZM2G128809 N 0.704
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.958
ISCW008885 Ixodes scapularis ISCW008885 I 0.803
ISCW010799 Ixodes scapularis ISCW010799 I 0.986
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.958
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.718
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.789
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.930