CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSTUMT00008723001
(
Tuber melanosporum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSTUMT00008723001
T56949_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00008723001
RRM
4
74
LFIGGLAWHTDDDALRQKFQEFGNVEEAVVVKDRDTGRSRGFGFVRYSSDEEATAAMDNMNDVEFDGRRIR
Links
Other
RRM
family RBPs
Other
Tuber melanosporum
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29890.m000285
Ricinus communis
29890.m000285
N
0.000
29929.m004643
Ricinus communis
29929.m004643
N
0.000
ECT9
Arabidopsis thaliana
AT1G27960-TAIR-G
N
0.000
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.000
ECT2
Arabidopsis thaliana
AT3G13460-TAIR-G
N
0.000
ECT10
Arabidopsis thaliana
AT5G58190-TAIR-G
N
0.000
ECT3
Arabidopsis thaliana
AT5G61020-TAIR-G
N
0.000
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.000
BGIOSIBCE026930
Oryza indica
BGIOSIBCE026930
N
0.000
BGIOSIBCE028829
Oryza indica
BGIOSIBCE028829
N
0.000
BRADI1G05970
Brachypodium distachyon
BRADI1G05970
N
0.000
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.000
BRADI3G18190
Brachypodium distachyon
BRADI3G18190
N
0.000
BRADI3G42640
Brachypodium distachyon
BRADI3G42640
N
0.000
cassava12061.valid.m1
Manihot esculenta
cassava12061.valid.m1
N
0.000
cassava1916.valid.m1
Manihot esculenta
cassava1916.valid.m1
N
0.000
cassava1917.valid.m1
Manihot esculenta
cassava1917.valid.m1
N
0.000
cassava1918.valid.m1
Manihot esculenta
cassava1918.valid.m1
N
0.000
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.000
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.000
cassava6538.valid.m1
Manihot esculenta
cassava6538.valid.m1
N
0.000
chr3.CM0292.380.nc
Lotus japonicus
chr3.CM0292.380.nc
N
0.000
Cucsa.356240
Cucumis sativus
Cucsa.356240
N
0.000
XM_002864508.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001450
N
0.000
XM_002882758.1
Arabidopsis lyrata
fgenesh2_kg.3__1376__AT3G13060.2
N
0.000
XM_002884922.1
Arabidopsis lyrata
fgenesh2_kg.3__1434__AT3G13460.1
N
0.000
Glyma07g00280.1
Glycine max
Glyma07g00280.1
N
0.000
Glyma08g24210.1
Glycine max
Glyma08g24210.1
N
0.000
GRMZM2G025488
Zea mays
GRMZM2G025488
N
0.000
GRMZM2G126338
Zea mays
GRMZM2G126338
N
0.000
GRMZM2G127780
Zea mays
GRMZM2G127780
N
0.000
GRMZM2G144726
Zea mays
GRMZM2G144726
N
0.000
GRMZM2G169116
Zea mays
GRMZM2G169116
N
0.000
GRMZM2G442195
Zea mays
GRMZM2G442195
N
0.000
GSVIVG00010494001
Vitis vinifera
GSVIVG00010494001
N
0.000
GSVIVG00029460001
Vitis vinifera
GSVIVG00029460001
N
0.000
GSVIVG00032236001
Vitis vinifera
GSVIVG00032236001
N
0.000
GSVIVG00033395001
Vitis vinifera
GSVIVG00033395001
N
0.000
gw1.181.55.1
Physcomitrella patens
gw1.181.55.1
N
0.000
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.000
LOC_Os04g51940
Oryza sativa
LOC_Os04g51940
N
0.000
LOC_Os08g12760
Oryza sativa
LOC_Os08g12760
N
0.000
LOC_Os08g44200
Oryza sativa
LOC_Os08g44200
N
0.000
MDP0000189157
Malus x domestica
MDP0000189157
N
0.000
MDP0000248088
Malus x domestica
MDP0000248088
N
0.000
MDP0000287088
Malus x domestica
MDP0000287088
N
0.000
MDP0000405927
Malus x domestica
MDP0000405927
N
0.000
MDP0000552419
Malus x domestica
MDP0000552419
N
0.000
MDP0000617859
Malus x domestica
MDP0000617859
N
0.000
Medtr4g163280
Medicago truncatula
Medtr4g163280
N
0.000
mgf019821m
Mimulus guttatus
mgf019821m
N
0.000
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.000
PK01736.1
Cannabis sativa
PK01736.1
N
0.000
PK05579.1
Cannabis sativa
PK05579.1
N
0.000
PK17832.1
Cannabis sativa
PK17832.1
N
0.000
B9GMK5_POPTR
Populus trichocarpa
POPTR_0001s13870
N
0.000
B9HBC4_POPTR
Populus trichocarpa
POPTR_0006s07970
N
0.000
B9HG69_POPTR
Populus trichocarpa
POPTR_0007s15150
N
0.000
B9N5D4_POPTR
Populus trichocarpa
POPTR_0014s00320
N
0.000
B9N817_POPTR
Populus trichocarpa
POPTR_0018s14670
N
0.000
ppa002483m
Prunus persica
ppa002483m
N
0.000
ppa002588m
Prunus persica
ppa002588m
N
0.000
ppa002677m
Prunus persica
ppa002677m
N
0.000
ppa003664m
Prunus persica
ppa003664m
N
0.000
SB01G008170
Sorghum bicolor
Sb01g008170
N
0.000
SB03G031190
Sorghum bicolor
Sb03g031190
N
0.000
SB06G027960
Sorghum bicolor
Sb06g027960
N
0.000
SB07G006330
Sorghum bicolor
Sb07g006330
N
0.000
SB07G024500
Sorghum bicolor
Sb07g024500
N
0.000