PDK_20s1549391g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1549391g001 T58184_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1549391g001 RRM 29 96
PDK_20s1549391g001 RRM 119 189
PDK_20s1549391g001 RRM 311 366

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001297 Ricinus communis 30183.m001297 N 0.711
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.741
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.778
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.768
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.746
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.736
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.716
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.802
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.711
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.797
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.802
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.812
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.716
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.701
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.741
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.751
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.812
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.746
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.756
MDP0000159547 Malus x domestica MDP0000159547 N 0.703
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.787
mgf012385m Mimulus guttatus mgf012385m N 0.721
PDK_20s1322741g003 Phoenix dactylifera PDK_20s1322741g003 N 0.796
PK20903.1 Cannabis sativa PK20903.1 N 0.787
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.798
ppa002854m Prunus persica ppa002854m N 0.802
SB01G021020 Sorghum bicolor Sb01g021020 N 0.746
SB01G046740 Sorghum bicolor Sb01g046740 N 0.741