GSVIVG00023998001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00023998001 T44716_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00023998001 RRM 46 108
GSVIVT00023998001 RRM 143 213
GSVIVT00023998001 RRM 355 410

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.916
30183.m001297 Ricinus communis 30183.m001297 N 0.905
PK01525.1 Cannabis sativa PK01525.1 N 0.847
ppa003064m Prunus persica ppa003064m N 0.847
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.843
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.838
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.832
MDP0000319817 Malus x domestica MDP0000319817 N 0.832
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.827
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.827
SB01G021020 Sorghum bicolor Sb01g021020 N 0.827
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.827
SB01G046740 Sorghum bicolor Sb01g046740 N 0.822
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.822
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.817
mgf012385m Mimulus guttatus mgf012385m N 0.806
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.802
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.797
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.789
ppa002854m Prunus persica ppa002854m N 0.787
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.784
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.782
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.782
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.782
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.782
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.778
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.777
PK20903.1 Cannabis sativa PK20903.1 N 0.777
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.777
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.768
POPTR_0009s13940 Populus trichocarpa POPTR_0009s13940 N 0.763
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.763
PDK_20s1383761g001 Phoenix dactylifera PDK_20s1383761g001 N 0.753
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.753
estExt_Genewise1.C_320014 Selaginella moellendorfii estExt_Genewise1.C_320014 N 0.749
BGIOSIBCE032206 Oryza indica BGIOSIBCE032206 N 0.746
PDK_20s1549391g001 Phoenix dactylifera PDK_20s1549391g001 N 0.746
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.737
estExt_gwp_gw1.C_3320014 Physcomitrella patens estExt_gwp_gw1.C_3320014 N 0.732
estExt_fgenesh1_pg.C_2070055 Physcomitrella patens estExt_fgenesh1_pg.C_2070055 N 0.711
ppa018661m Prunus persica ppa018661m N 0.700