30183.m001297 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30183.m001297 T48789_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30183.m001297 RRM 235 297
30183.m001297 RRM 328 397
30183.m001297 RRM 538 592

Links

Other RRM family RBPs
Other Ricinus communis RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.952
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.905
PK01525.1 Cannabis sativa PK01525.1 N 0.873
ppa003064m Prunus persica ppa003064m N 0.852
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.847
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.841
MDP0000319817 Malus x domestica MDP0000319817 N 0.835
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.821
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.816
SB01G046740 Sorghum bicolor Sb01g046740 N 0.816
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.811
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.807
SB01G021020 Sorghum bicolor Sb01g021020 N 0.806
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.806
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.801
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.801
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.798
mgf012385m Mimulus guttatus mgf012385m N 0.796
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.785
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.783
POPTR_0009s13940 Populus trichocarpa POPTR_0009s13940 N 0.783
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.766
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.766
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.762
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.751
ppa002854m Prunus persica ppa002854m N 0.751
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.751
PK20903.1 Cannabis sativa PK20903.1 N 0.746
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.746
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.746
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.746
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.741
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.732
estExt_Genewise1.C_320014 Selaginella moellendorfii estExt_Genewise1.C_320014 N 0.726
ppa018661m Prunus persica ppa018661m N 0.713
PDK_20s1549391g001 Phoenix dactylifera PDK_20s1549391g001 N 0.711
BGIOSIBCE032206 Oryza indica BGIOSIBCE032206 N 0.704
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.704
PDK_20s1383761g001 Phoenix dactylifera PDK_20s1383761g001 N 0.700