cassava37705.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava37705.valid.m1 T49357_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava37705.valid.m1 RRM 227 289
cassava37705.valid.m1 RRM 320 389
cassava37705.valid.m1 RRM 530 585

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001297 Ricinus communis 30183.m001297 N 0.952
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.916
PK01525.1 Cannabis sativa PK01525.1 N 0.873
ppa003064m Prunus persica ppa003064m N 0.868
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.842
MDP0000319817 Malus x domestica MDP0000319817 N 0.841
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.827
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.821
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.808
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.807
SB01G046740 Sorghum bicolor Sb01g046740 N 0.802
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.802
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.799
POPTR_0009s13940 Populus trichocarpa POPTR_0009s13940 N 0.799
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.797
SB01G021020 Sorghum bicolor Sb01g021020 N 0.792
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.792
mgf012385m Mimulus guttatus mgf012385m N 0.791
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.787
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.786
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.783
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.777
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.766
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.756
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.753
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.751
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.751
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.751
ppa002854m Prunus persica ppa002854m N 0.751
PK20903.1 Cannabis sativa PK20903.1 N 0.746
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.741
estExt_Genewise1.C_320014 Selaginella moellendorfii estExt_Genewise1.C_320014 N 0.738
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.737
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.732
PDK_20s1383761g001 Phoenix dactylifera PDK_20s1383761g001 N 0.721
ppa018661m Prunus persica ppa018661m N 0.720
PDK_20s1549391g001 Phoenix dactylifera PDK_20s1549391g001 N 0.716
BGIOSIBCE032206 Oryza indica BGIOSIBCE032206 N 0.714
estExt_gwp_gw1.C_3320014 Physcomitrella patens estExt_gwp_gw1.C_3320014 N 0.711
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.700