CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAA49950
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAA49950
T59422_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.859
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.859
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.859
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.838
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.796
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAA49950
RRM
29
98
LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVE
AAA49950
RRM
120
191
IFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
283 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI08588
Xenopus laevis
AAI08588
N
0.000
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.000
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.000
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.000
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.000
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.000
MYEF2
Cavia porcellus
ENSCPOG00000010584
N
0.000
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.000
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.000
MYEF2
Homo sapiens
ENSG00000104177
N
0.000
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.000
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.000
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.000
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.000
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.000
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.000
MYEF2
Monodelphis domestica
ENSMODG00000002744
N
0.000
Myef2
Mus musculus
ENSMUSG00000027201
N
0.000
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.000
MYEF2
Ornithorhynchus anatinus
ENSOANG00000007375
N
0.000
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.000
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.000
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.000
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.000
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.000
MYEF2
Pteropus vampyrus
ENSPVAG00000004102
N
0.000
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.000
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.000
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.000
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.000
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.000
MYEF2
Tarsius syrichta
ENSTSYG00000010575
N
0.000
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.000
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.000
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.000