AAA49950 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49950 T59422_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.859
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.859
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.859
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.838
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.796
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49950 RRM 29 98
AAA49950 RRM 120 191

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

283 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI08588 Xenopus laevis AAI08588 N 0.000
Ame_R005511 Ailuropoda melanoleuca Ame_R005511 N 0.000
MYEF2 Anolis carolinensis ENSACAG00000004806 N 0.000
A6QQP0_BOVIN Bos taurus ENSBTAG00000008771 N 0.000
MYEF2 Canis familiaris ENSCAFG00000014008 N 0.000
MYEF2 Callithrix jacchus ENSCJAG00000001875 N 0.000
MYEF2 Cavia porcellus ENSCPOG00000010584 N 0.000
ENSDORG00000015835 Dipodomys ordii ENSDORG00000015835 N 0.000
LOC100070256 Equus caballus ENSECAG00000005741 N 0.000
MYEF2 Homo sapiens ENSG00000104177 N 0.000
MYEF2 Gasterosteus aculeatus ENSGACG00000016759 N 0.000
Q5ZHY2_CHICK Gallus gallus ENSGALG00000004905 N 0.000
MYEF2 Gorilla gorilla ENSGGOG00000014968 N 0.000
MYEF2 Loxodonta africana ENSLAFG00000012990 N 0.000
MYEF2 Meleagris gallopavo ENSMGAG00000006915 N 0.000
MYEF2 Macaca mulatta ENSMMUG00000018834 N 0.000
MYEF2 Monodelphis domestica ENSMODG00000002744 N 0.000
Myef2 Mus musculus ENSMUSG00000027201 N 0.000
Hnrnpm Mus musculus ENSMUSG00000059208 N 0.000
MYEF2 Ornithorhynchus anatinus ENSOANG00000007375 N 0.000
MYEF2 Oryctolagus cuniculus ENSOCUG00000013043 N 0.000
MYEF2 Oryzias latipes ENSORLG00000002730 N 0.000
MYEF2 Procavia capensis ENSPCAG00000016660 N 0.000
ENSPPYG00000006452 Pongo pygmaeus ENSPPYG00000006452 N 0.000
MYEF2 Pan troglodytes ENSPTRG00000007042 N 0.000
MYEF2 Pteropus vampyrus ENSPVAG00000004102 N 0.000
Myef2 Rattus norvegicus ENSRNOG00000005258 N 0.000
MYEF2 Sus scrofa ENSSSCG00000004661 N 0.000
MYEF2 Taeniopygia guttata ENSTGUG00000007130 N 0.000
MYEF2 Tetraodon nigroviridis ENSTNIG00000009526 N 0.000
MYEF2 Takifugu rubripes ENSTRUG00000016967 N 0.000
MYEF2 Tarsius syrichta ENSTSYG00000010575 N 0.000
MYEF2 Tursiops truncatus ENSTTRG00000008076 N 0.000
MYEF2 Vicugna pacos ENSVPAG00000004721 N 0.000
myef2 Xenopus tropicalis ENSXETG00000018412 N 0.000