AAA49950 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49950 T59422_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.859
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.859
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.859
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.838
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.796
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49950 RRM 29 98
AAA49950 RRM 120 191

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

283 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_212000013 Daphnia pulex fgenesh1_pg.C_scaffold_212000013 N 0.000
Genemark.2570_g Serpula lacrymans Genemark.2570_g N 0.000
PGTG_03172 Puccinia graminis PGTG_03172 N 0.000
PGTG_03348 Puccinia graminis PGTG_03348 N 0.000
PGTG_05307 Puccinia graminis PGTG_05307 N 0.000
PGTG_05406 Puccinia graminis PGTG_05406 N 0.000
PGTG_05408 Puccinia graminis PGTG_05408 N 0.000
PGTG_09834 Puccinia graminis PGTG_09834 N 0.000
PGTG_12045 Puccinia graminis PGTG_12045 N 0.000
PGTG_12646 Puccinia graminis PGTG_12646 N 0.000
PGTG_14567 Puccinia graminis PGTG_14567 N 0.000
PGTG_16335 Puccinia graminis PGTG_16335 N 0.000
PGTG_18613 Puccinia graminis PGTG_18613 N 0.000
PGTG_20442 Puccinia graminis PGTG_20442 N 0.000
PTTG_01306 Puccinia triticina PTTG_01306 N 0.000
PTTG_03874 Puccinia triticina PTTG_03874 N 0.000
PTTG_04497 Puccinia triticina PTTG_04497 N 0.000
PTTG_06752 Puccinia triticina PTTG_06752 N 0.000
PTTG_07033 Puccinia triticina PTTG_07033 N 0.000
PTTG_07469 Puccinia triticina PTTG_07469 N 0.000
PTTG_08330 Puccinia triticina PTTG_08330 N 0.000
PTTG_08665 Puccinia triticina PTTG_08665 N 0.000
PTTG_08777 Puccinia triticina PTTG_08777 N 0.000
PTTG_09518 Puccinia triticina PTTG_09518 N 0.000
PTTG_09789 Puccinia triticina PTTG_09789 N 0.000
PTTG_10278 Puccinia triticina PTTG_10278 N 0.000
PTTG_10451 Puccinia triticina PTTG_10451 N 0.000
PTTG_10552 Puccinia triticina PTTG_10552 N 0.000
PTTG_10713 Puccinia triticina PTTG_10713 N 0.000
PTTG_10751 Puccinia triticina PTTG_10751 N 0.000
PTTG_10809 Puccinia triticina PTTG_10809 N 0.000
PTTG_11057 Puccinia triticina PTTG_11057 N 0.000
PTTG_11068 Puccinia triticina PTTG_11068 N 0.000
PTTG_11278 Puccinia triticina PTTG_11278 N 0.000
PTTG_11299 Puccinia triticina PTTG_11299 N 0.000
PTTG_11462 Puccinia triticina PTTG_11462 N 0.000
PTTG_11563 Puccinia triticina PTTG_11563 N 0.000