B9GWA9_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0003s20310 T00747_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s20310.1 CCCH ZF 234 255
POPTR_0003s20310.1 RRM 369 428
POPTR_0003s20310.2 CCCH ZF 233 255
POPTR_0003s20310.2 RRM 369 428
POPTR_0003s20310.3 CCCH ZF 234 255
POPTR_0003s20310.3 RRM 369 428

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.902
mgf013141m Mimulus guttatus mgf013141m N 0.000
e_gw1.43.473.1 Selaginella moellendorfii e_gw1.43.473.1 N 0.000
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.802
Cucsa.067590 Cucumis sativus Cucsa.067590 N 0.000
cassava2293.valid.m1 Manihot esculenta cassava2293.valid.m1 N 0.000
GSVIVG00030048001 Vitis vinifera GSVIVG00030048001 N 0.000
XM_002883237.1 Arabidopsis lyrata fgenesh2_kg.3__2330__AT3G21100.2 N 0.000
XM_002891597.1 Arabidopsis lyrata fgenesh2_kg.1__4219__AT1G51520.1 N 0.000
AT3G63450 Arabidopsis thaliana AT3G63450-TAIR-G N 0.000
AT3G21100 Arabidopsis thaliana AT3G21100-TAIR-G N 0.000
PK28383.1 Cannabis sativa PK28383.1 N 0.000
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.880
MDP0000214823 Malus x domestica MDP0000214823 N 0.000