Cucsa.200060 (Cucumis sativus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Cucsa.200060 T00860_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.200060.1 CCCH ZF 13 39
Cucsa.200060.1 RRM 70 140
Cucsa.200060.1 CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Cucumis sativus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa025949m Prunus persica ppa025949m N 0.855
mgf004170m Mimulus guttatus mgf004170m N 0.790
mgf003009m Mimulus guttatus mgf003009m N 0.790
mgf001805m Mimulus guttatus mgf001805m N 0.750
mgf001260m Mimulus guttatus mgf001260m N 0.790
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.790
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.825
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.815
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.847
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.758
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.815
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.823
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.702
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.790
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.718
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.750
mgf010816m Mimulus guttatus mgf010816m N 0.815
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.758
ppa008459m Prunus persica ppa008459m N 0.823
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.774
MDP0000640144 Malus x domestica MDP0000640144 N 0.855
MDP0000321343 Malus x domestica MDP0000321343 N 0.766
MDP0000284705 Malus x domestica MDP0000284705 N 0.855
MDP0000179037 Malus x domestica MDP0000179037 N 0.823
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.839
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.726
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.726
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.782
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.806
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.792
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.758
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.758
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.758
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.750
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.718
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.766
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.887
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.839
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.774
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.742
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.855
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.758
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.766
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.823
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.742
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.726
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.742
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.774
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.742
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.758
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.847
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.766
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.774
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.839
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.726
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.823
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.823
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.823
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.790
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.806
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.831
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.831
30170.m013808 Ricinus communis 30170.m013808 N 0.774
29991.m000639 Ricinus communis 29991.m000639 N 0.936
29092.m000448 Ricinus communis 29092.m000448 N 0.831
SB09G028530 Sorghum bicolor Sb09g028530 N 0.758
SB03G030670 Sorghum bicolor Sb03g030670 N 0.750
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.766