chr1.CM0378.200.nd (Lotus japonicus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		chr1.CM0378.200.nd T01051_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0378.200.nd CCCH ZF 13 39
chr1.CM0378.200.nd RRM 88 146
chr1.CM0378.200.nd CCCH ZF 155 180

Links

Other CCCH ZF,RRM family RBPs
Other Lotus japonicus RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa025949m Prunus persica ppa025949m N 0.902
mgf010816m Mimulus guttatus mgf010816m N 0.866
mgf004170m Mimulus guttatus mgf004170m N 0.902
mgf003009m Mimulus guttatus mgf003009m N 0.902
mgf001805m Mimulus guttatus mgf001805m N 0.821
mgf001260m Mimulus guttatus mgf001260m N 0.902
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.705
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.821
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.714
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.964
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.902
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.804
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.964
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.848
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.821
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.759
s_458600 Phytophthora sojae s_458600 N 0.714
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.786
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.786
ppa008459m Prunus persica ppa008459m N 0.920
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.804
MDP0000640144 Malus x domestica MDP0000640144 N 0.911
MDP0000321343 Malus x domestica MDP0000321343 N 0.821
MDP0000284705 Malus x domestica MDP0000284705 N 0.893
MDP0000179037 Malus x domestica MDP0000179037 N 0.920
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.893
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.795
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.795
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.714
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.857
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.728
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.795
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.714
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.786
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.795
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.821
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.847
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.742
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.839
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.777
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.911
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.830
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.848
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.830
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.804
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.777
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.777
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.839
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.777
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.830
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.848
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.839
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.920
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.804
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.806
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.902
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.768
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.920
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.920
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.920
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.821
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.866
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.911
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.911
30170.m013808 Ricinus communis 30170.m013808 N 0.821
29991.m000639 Ricinus communis 29991.m000639 N 0.800
29092.m000448 Ricinus communis 29092.m000448 N 0.920
SB09G028530 Sorghum bicolor Sb09g028530 N 0.786
SB03G030670 Sorghum bicolor Sb03g030670 N 0.804
PITG_05688 Phytophthora infestans PITG_05688 N 0.714