CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZCRB1
(
Gorilla gorilla
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
ENSGGOG00000015647
T07260_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZCRB1
M085_0.6
Homo sapiens
GRHUUAA
RNAcompete
Ray et al.(2013)
RNCMPT00087
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000015265
RRM
12
82
VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK
ENSGGOP00000015265
CCHC ZF
105
122
SKCYECGESGHLSYACPK
Links
Other
CCHC ZF,RRM
family RBPs
Other
Gorilla gorilla
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa003557m
Prunus persica
ppa003557m
N
0.000
mgf001716m
Mimulus guttatus
mgf001716m
N
0.000
cassava38867.m1
Manihot esculenta
cassava38867.m1
N
0.000
cassava38866.m1
Manihot esculenta
cassava38866.m1
N
0.000
cassava35667.valid.m1
Manihot esculenta
cassava35667.valid.m1
N
0.000
cassava35666.valid.m1
Manihot esculenta
cassava35666.valid.m1
N
0.000
cassava35665.valid.m1
Manihot esculenta
cassava35665.valid.m1
N
0.000
cassava35663.valid.m1
Manihot esculenta
cassava35663.valid.m1
N
0.000
cassava35662.valid.m1
Manihot esculenta
cassava35662.valid.m1
N
0.000
cassava35661.valid.m1
Manihot esculenta
cassava35661.valid.m1
N
0.000
mgf014829m
Mimulus guttatus
mgf014829m
N
0.000
mgf019846m
Mimulus guttatus
mgf019846m
N
0.000
PDK_20s1308332g001
Phoenix dactylifera
PDK_20s1308332g001
N
0.000
MDP0000488248
Malus x domestica
MDP0000488248
N
0.000
MDP0000256033
Malus x domestica
MDP0000256033
N
0.000
LjSGA_073042.1
Lotus japonicus
LjSGA_073042.1
N
0.000
LjSGA_044186.1
Lotus japonicus
LjSGA_044186.1
N
0.000
chr6.CM0885.320.nc
Lotus japonicus
chr6.CM0885.320.nc
N
0.000
chr6.CM0885.260.nc
Lotus japonicus
chr6.CM0885.260.nc
N
0.000
Medtr2g005610
Medicago truncatula
Medtr2g005610
N
0.000
GRMZM2G303312
Zea mays
GRMZM2G303312
N
0.000
cassava35660.valid.m1
Manihot esculenta
cassava35660.valid.m1
N
0.000
cassava35659.valid.m1
Manihot esculenta
cassava35659.valid.m1
N
0.000
B9N770_POPTR
Populus trichocarpa
POPTR_0022s00680
N
0.000
B9N0D5_POPTR
Populus trichocarpa
POPTR_0004s23250
N
0.000
LOC_Os05g01520
Oryza sativa
LOC_Os05g01520
N
0.000
LOC_Os04g04000
Oryza sativa
LOC_Os04g04000
N
0.000
GSVIVG00023248001
Vitis vinifera
GSVIVG00023248001
N
0.000
BRADI5G01317
Brachypodium distachyon
BRADI5G01317
N
0.000
BRADI4G02150
Brachypodium distachyon
BRADI4G02150
N
0.000
BRADI3G06027
Brachypodium distachyon
BRADI3G06027
N
0.000
BGIOSIBCE017245
Oryza indica
BGIOSIBCE017245
N
0.000
SB09G000580
Sorghum bicolor
Sb09g000580
N
0.000
29765.m000746
Ricinus communis
29765.m000746
N
0.000
cassava35658.valid.m1
Manihot esculenta
cassava35658.valid.m1
N
0.000
cassava35657.valid.m1
Manihot esculenta
cassava35657.valid.m1
N
0.000
cassava30729.valid.m1
Manihot esculenta
cassava30729.valid.m1
N
0.000
cassava30728.valid.m1
Manihot esculenta
cassava30728.valid.m1
N
0.000
cassava30727.valid.m1
Manihot esculenta
cassava30727.valid.m1
N
0.000
cassava14932.m1
Manihot esculenta
cassava14932.m1
N
0.000
cassava13324.valid.m1
Manihot esculenta
cassava13324.valid.m1
N
0.000
cassava13323.valid.m1
Manihot esculenta
cassava13323.valid.m1
N
0.000
cassava13322.valid.m1
Manihot esculenta
cassava13322.valid.m1
N
0.000
PK26094.1
Cannabis sativa
PK26094.1
N
0.000