CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os09g14790
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os09g14790
T12131_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os09g14790.1
CCHC ZF
325
342
GPCFNCGKHGHFASKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
223 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ALKB8_BOVIN
Bos taurus
ENSBTAG00000010642
N
0.000
ALKBH8
Oryctolagus cuniculus
ENSOCUG00000011931
N
0.000
ALKBH8
Otolemur garnettii
ENSOGAG00000004956
N
0.000
ALKBH8
Ochotona princeps
ENSOPRG00000009592
N
0.000
ALKBH8
Procavia capensis
ENSPCAG00000005589
N
0.000
ALKBH8
Pan troglodytes
ENSPTRG00000004240
N
0.000
D3ZKL7_RAT
Rattus norvegicus
ENSRNOG00000024525
N
0.000
ALKBH8
Sorex araneus
ENSSARG00000008350
N
0.000
ENSSTOG00000007139
Spermophilus tridecemlineatus
ENSSTOG00000007139
N
0.000
ALKBH8
Tarsius syrichta
ENSTSYG00000007339
N
0.000
ALKBH8
Tursiops truncatus
ENSTTRG00000000238
N
0.000
ALKBH8
Vicugna pacos
ENSVPAG00000004932
N
0.000
ENSOANG00000010463
Ornithorhynchus anatinus
ENSOANG00000010463
N
0.000
Alkbh8
Mus musculus
ENSMUSG00000025899
N
0.000
LOC100025269
Monodelphis domestica
ENSMODG00000014721
N
0.000
ALKBH8
Canis familiaris
ENSCAFG00000014696
N
0.000
ALKBH8
Cavia porcellus
ENSCPOG00000006875
N
0.000
Alkbh8
Dipodomys ordii
ENSDORG00000008596
N
0.000
LOC100061658
Equus caballus
ENSECAG00000019425
N
0.000
ALKBH8
Felis catus
ENSFCAG00000003526
N
0.000
ALKBH8
Homo sapiens
ENSG00000137760
N
0.000
ALKBH8
Gorilla gorilla
ENSGGOG00000015505
N
0.000
ALKBH8
Loxodonta africana
ENSLAFG00000017895
N
0.000
ENSMEUG00000015254
Macropus eugenii
ENSMEUG00000015254
N
0.000
ALKBH8
Microcebus murinus
ENSMICG00000001044
N
0.000
ALKBH8
Macaca mulatta
ENSMMUG00000005437
N
0.000
Ame_R017945
Ailuropoda melanoleuca
Ame_R017945
N
0.000