CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os11g22550
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os11g22550
T12388_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os11g22550.1
CCHC ZF
203
220
GVCFNCGDPGHYANKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
400 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCAFG00000006386
Canis familiaris
ENSCAFG00000006386
I
0.000
ENSCAFG00000010467
Canis familiaris
ENSCAFG00000010467
I
0.000
ENSCAFG00000013932
Canis familiaris
ENSCAFG00000013932
I
0.000
ENSCAFG00000016707
Canis familiaris
ENSCAFG00000016707
I
0.000
ENSCAFG00000024812
Canis familiaris
ENSCAFG00000024812
I
0.000
ENSCAFG00000017467
Canis familiaris
ENSCAFG00000017467
I
0.000
ENSBTAG00000012763
Bos taurus
ENSBTAG00000012763
N
0.000
ENSETEG00000012394
Echinops telfairi
ENSETEG00000012394
N
0.000
ENSCPOG00000020972
Cavia porcellus
ENSCPOG00000020972
N
0.000
ENSCAFG00000017240
Canis familiaris
ENSCAFG00000017240
N
0.000
ENSCAFG00000017180
Canis familiaris
ENSCAFG00000017180
N
0.000
ENSCAFG00000000389
Canis familiaris
ENSCAFG00000000389
N
0.000
D3ZSC3_RAT
Rattus norvegicus
ENSRNOG00000027915
N
0.000