cassava16460.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava16460.m1 T13367_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava16460.m1 CCHC ZF 428 445

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.722
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.889
cassava38772.m1 Manihot esculenta cassava38772.m1 N 0.722
cassava3938.m1 Manihot esculenta cassava3938.m1 N 0.722
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.833
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.833
cassava45216.m1 Manihot esculenta cassava45216.m1 N 0.722
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.944
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.833
cassava38763.m1 Manihot esculenta cassava38763.m1 N 0.778
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.889
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.722
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.722
cassava15406.m1 Manihot esculenta cassava15406.m1 N 0.833
cassava3117.m1 Manihot esculenta cassava3117.m1 N 0.722
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.778
cassava33153.m1 Manihot esculenta cassava33153.m1 N 0.778
cassava33793.m1 Manihot esculenta cassava33793.m1 N 0.778
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.833
cassava9619.m1 Manihot esculenta cassava9619.m1 N 0.833