AT1G35115 (Arabidopsis thaliana)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 AT1G35115-TAIR-G T09301_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G35115.1-P CCHC ZF 90 107

Links

Other CCHC ZF family RBPs
Other Arabidopsis thaliana RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 1.000
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 1.000
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.833
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.778
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.778
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.778
fgenesh1_pg.C_scaffold_175000012 Daphnia pulex fgenesh1_pg.C_scaffold_175000012 N 0.778
estExt_Genewise1Plus.C_150138 Agaricus bisporus estExt_Genewise1Plus.C_150138 N 0.722
estExt_Genewise1Plus.C_130360 Agaricus bisporus estExt_Genewise1Plus.C_130360 N 0.722
estExt_Genewise1Plus.C_160037 Agaricus bisporus estExt_Genewise1Plus.C_160037 N 0.722
estExt_Genewise1Plus.C_170202 Agaricus bisporus estExt_Genewise1Plus.C_170202 N 0.722
estExt_Genewise1Plus.C_21362 Agaricus bisporus estExt_Genewise1Plus.C_21362 N 0.722
estExt_Genewise1Plus.C_190041 Agaricus bisporus estExt_Genewise1Plus.C_190041 N 0.722
estExt_Genewise1Plus.C_180004 Agaricus bisporus estExt_Genewise1Plus.C_180004 N 0.722
e_gw1.9.1196.1 Agaricus bisporus e_gw1.9.1196.1 N 0.722
e_gw1.8.1263.1 Agaricus bisporus e_gw1.8.1263.1 N 0.722
e_gw1.5.2042.1 Agaricus bisporus e_gw1.5.2042.1 N 0.722
e_gw1.6.1492.1 Agaricus bisporus e_gw1.6.1492.1 N 0.722
e_gw1.8.1265.1 Agaricus bisporus e_gw1.8.1265.1 N 0.722
estExt_Genewise1Plus.C_240008 Agaricus bisporus estExt_Genewise1Plus.C_240008 N 0.722
e_gw1.9.1197.1 Agaricus bisporus e_gw1.9.1197.1 N 0.722
e_gw1.6.1491.1 Agaricus bisporus e_gw1.6.1491.1 N 0.722
estExt_Genewise1Plus.C_110267 Agaricus bisporus estExt_Genewise1Plus.C_110267 N 0.722
estExt_Genewise1Plus.C_50161 Agaricus bisporus estExt_Genewise1Plus.C_50161 N 0.722
estExt_Genewise1Plus.C_90730 Agaricus bisporus estExt_Genewise1Plus.C_90730 N 0.722
estExt_Genewise1Plus.C_90717 Agaricus bisporus estExt_Genewise1Plus.C_90717 N 0.722
estExt_Genewise1Plus.C_90531 Agaricus bisporus estExt_Genewise1Plus.C_90531 N 0.722
Genemark.5195_g Agaricus bisporus Genemark.5195_g N 0.722
Genemark.6596_g Agaricus bisporus Genemark.6596_g N 0.722
gw1.14.564.1 Agaricus bisporus gw1.14.564.1 N 0.722
Genemark.9626_g Agaricus bisporus Genemark.9626_g N 0.722
estExt_Genewise1Plus.C_81032 Agaricus bisporus estExt_Genewise1Plus.C_81032 N 0.722
estExt_Genewise1Plus.C_80108 Agaricus bisporus estExt_Genewise1Plus.C_80108 N 0.722
e_gw1.5.2041.1 Agaricus bisporus e_gw1.5.2041.1 N 0.722
estExt_Genewise1Plus.C_41602 Agaricus bisporus estExt_Genewise1Plus.C_41602 N 0.722
estExt_Genewise1Plus.C_41557 Agaricus bisporus estExt_Genewise1Plus.C_41557 N 0.722
estExt_Genewise1Plus.C_50705 Agaricus bisporus estExt_Genewise1Plus.C_50705 N 0.722
estExt_Genewise1Plus.C_51714 Agaricus bisporus estExt_Genewise1Plus.C_51714 N 0.722
estExt_Genewise1Plus.C_70406 Agaricus bisporus estExt_Genewise1Plus.C_70406 N 0.722
estExt_Genewise1Plus.C_51735 Agaricus bisporus estExt_Genewise1Plus.C_51735 N 0.722
estExt_Genewise1Plus.C_30058 Agaricus bisporus estExt_Genewise1Plus.C_30058 N 0.722
e_gw1.14.590.1 Agaricus bisporus e_gw1.14.590.1 N 0.722
fgenesh1_pg.C_scaffold_33000112 Daphnia pulex fgenesh1_pg.C_scaffold_33000112 N 0.722
fgenesh1_pg.C_scaffold_205000008 Daphnia pulex fgenesh1_pg.C_scaffold_205000008 N 0.722
fgenesh1_pg.C_scaffold_140000007 Daphnia pulex fgenesh1_pg.C_scaffold_140000007 N 0.722
fgenesh1_pg.C_scaffold_386000003 Daphnia pulex fgenesh1_pg.C_scaffold_386000003 N 0.722
Glyma08g26190.1 Glycine max Glyma08g26190.1 N 0.722
Glyma18g27720.1 Glycine max Glyma18g27720.1 N 0.722
Glyma10g21320.1 Glycine max Glyma10g21320.1 N 0.722
Cucsa.292310 Cucumis sativus Cucsa.292310 N 0.722
cassava9619.m1 Manihot esculenta cassava9619.m1 N 0.722
cassava28357.m1 Manihot esculenta cassava28357.m1 N 0.722
cassava16460.m1 Manihot esculenta cassava16460.m1 N 0.722
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.722
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.722
cassava3938.m1 Manihot esculenta cassava3938.m1 N 0.722
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.722
NCBI_GNO_456000001 Daphnia pulex NCBI_GNO_456000001 N 0.722
s_475569 Phytophthora sojae s_475569 N 0.722
e_gw1.1.2997.1 Agaricus bisporus e_gw1.1.2997.1 N 0.722
e_gw1.1.2995.1 Agaricus bisporus e_gw1.1.2995.1 N 0.722
e_gw1.12.818.1 Agaricus bisporus e_gw1.12.818.1 N 0.722
e_gw1.1.2998.1 Agaricus bisporus e_gw1.1.2998.1 N 0.722
e_gw1.13.687.1 Agaricus bisporus e_gw1.13.687.1 N 0.722
e_gw1.3.1895.1 Agaricus bisporus e_gw1.3.1895.1 N 0.722
e_gw1.2.2558.1 Agaricus bisporus e_gw1.2.2558.1 N 0.722
e_gw1.11.822.1 Agaricus bisporus e_gw1.11.822.1 N 0.722
e_gw1.10.994.1 Agaricus bisporus e_gw1.10.994.1 N 0.722
SNAP_00029977 Daphnia pulex SNAP_00029977 N 0.722
SNAP_00020521 Daphnia pulex SNAP_00020521 N 0.722
SNAP_00031168 Daphnia pulex SNAP_00031168 N 0.722
SNAP_00037736 Daphnia pulex SNAP_00037736 N 0.722
e_gw1.10.1118.1 Agaricus bisporus e_gw1.10.1118.1 N 0.722
SNAP_00038773 Daphnia pulex SNAP_00038773 N 0.722
e_gw1.3.1898.1 Agaricus bisporus e_gw1.3.1898.1 N 0.722