s_475569 (Phytophthora sojae)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 s_475569 T14912_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
s_475569 CCHC ZF 240 257

Links

Other CCHC ZF family RBPs
Other Phytophthora sojae RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G11265 Arabidopsis thaliana AT1G11265-TAIR-G N 0.722
fgenesh1_pg.C_scaffold_205000008 Daphnia pulex fgenesh1_pg.C_scaffold_205000008 N 0.722
fgenesh1_pg.C_scaffold_33000112 Daphnia pulex fgenesh1_pg.C_scaffold_33000112 N 0.722
fgenesh1_pg.C_scaffold_386000003 Daphnia pulex fgenesh1_pg.C_scaffold_386000003 N 0.722
NCBI_GNO_456000001 Daphnia pulex NCBI_GNO_456000001 N 0.722
s_451916 Phytophthora sojae s_451916 N 0.833
SNAP_00020521 Daphnia pulex SNAP_00020521 N 0.722
SNAP_00029977 Daphnia pulex SNAP_00029977 N 0.722
SNAP_00031168 Daphnia pulex SNAP_00031168 N 0.722
SNAP_00037736 Daphnia pulex SNAP_00037736 N 0.722
fgenesh1_pg.C_scaffold_175000012 Daphnia pulex fgenesh1_pg.C_scaffold_175000012 N 0.722
fgenesh1_pg.C_scaffold_1682000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1682000001 N 0.889
fgenesh1_pg.C_scaffold_140000007 Daphnia pulex fgenesh1_pg.C_scaffold_140000007 N 0.722
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.722
AT1G48710 Arabidopsis thaliana AT1G48710-TAIR-G N 0.722
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.722
AT1G58140 Arabidopsis thaliana AT1G58140-TAIR-G N 0.722
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.722
AT3G59720 Arabidopsis thaliana AT3G59720-TAIR-G N 0.722
AT3G61330 Arabidopsis thaliana AT3G61330-TAIR-G N 0.722
AT5G13205 Arabidopsis thaliana AT5G13205-TAIR-G N 0.722
fgenesh1_pg.C_scaffold_1378000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1378000001 N 0.889
SNAP_00038773 Daphnia pulex SNAP_00038773 N 0.722