CRE07377 (Caenorhabditis remanei)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CRE07377 T34381_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		1.000
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.754
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.754
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.754
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.754
asd-1
M171_0.6 		Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CRE07377 RRM 159 227

Links

Other RRM family RBPs
Other Caenorhabditis remanei RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A2BP1 Homo sapiens ENSG00000078328 D 0.754
a2bp1 Drosophila melanogaster FBgn0052062 D 0.754
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.754
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.754
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.754
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.754
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.768
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.754
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.754
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.754
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.754
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.754
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.754
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.754
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.754
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.754
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.754
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.754
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.754
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.754
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.754
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.754
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.754
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.739
PHUM098700 Pediculus humanus PHUM098700 I 0.754
GE21749 Drosophila yakuba FBgn0238995 I 0.754
GK12272 Drosophila willistoni FBgn0214282 I 0.754
GJ13667 Drosophila virilis FBgn0200888 I 0.754
GD14245 Drosophila simulans FBgn0185930 I 0.754
GM25214 Drosophila sechellia FBgn0180074 I 0.754
GI11474 Drosophila mojavensis FBgn0134235 I 0.754
GH14949 Drosophila grimshawi FBgn0122424 I 0.754
GG15438 Drosophila erecta FBgn0107689 I 0.754
GF10597 Drosophila ananassae FBgn0087638 I 0.754
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.754
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.754
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.754
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.754
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.754
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.754
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.754
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.754
LOC100069362 Equus caballus ENSECAG00000018923 I 0.754
LOC100066233 Equus caballus ENSECAG00000012667 I 0.754
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.754
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.754
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.754
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.754
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.754
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.754
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.754
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.754
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.754
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.754
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.754
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.754
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.754
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.768
AGAP006089 Anopheles gambiae AGAP006089 I 0.768
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.754
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.739
RBFOX2 Homo sapiens ENSG00000100320 I 0.754
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.754
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.754
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.754
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.754
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.754
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.754
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.754
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.754
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.754
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.754
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.754
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.754
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.754
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.754
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.754
RBM9 Gallus gallus ENSGALG00000012540 I 0.754
A2BP1 Gallus gallus ENSGALG00000007366 I 0.754
AAEL017168 Aedes aegypti AAEL017168 I 0.754