ENSTRUG00000007739 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000007739 T42261_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.928
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.928
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.913
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.884
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000019245 RRM 106 174
ENSTRUP00000019246 RRM 106 174

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.957
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.942
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.928
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.928
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.928
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.928
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.928
LOC100069362 Equus caballus ENSECAG00000018923 I 0.928
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.928
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.928
LOC100066233 Equus caballus ENSECAG00000012667 I 0.928
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.928
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.928
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.928
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.928
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.928
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.928
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.928
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.928
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.928
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.928
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.928
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.928
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.928
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.928
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.928
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.928
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.928
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.928
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.928
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.928
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.928
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.928
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.928
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.928
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.928
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.928
RBFOX2 Homo sapiens ENSG00000100320 I 0.928
A2BP1 Homo sapiens ENSG00000078328 D 0.928
A2BP1 Gallus gallus ENSGALG00000007366 I 0.928
RBM9 Gallus gallus ENSGALG00000012540 I 0.928
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.928
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.928
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.928
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.928
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.928
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.928
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.928
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.928
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.928
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.928
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.928
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.928
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.928
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.928
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.928
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.928
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.928
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.928
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.928
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.928
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.928
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.928
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.913
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.913
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.913
a2bp1 Danio rerio ENSDARG00000014746 D 0.913
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.913
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.913
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.913
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.913
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.913
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.899
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.899
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.899
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.899
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.899
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.899
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.899
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.899
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.899
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.899
RBFOX3 Homo sapiens ENSG00000167281 I 0.899
RBFOX3 Equus caballus ENSECAG00000023811 I 0.899
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.899
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.899
AAI69563 Xenopus laevis AAI69563 I 0.899
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.899
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.899
AAI55921 Xenopus laevis AAI55921 I 0.899
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.899
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.899
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.899
CAL91350 Xenopus laevis CAL91350 I 0.899
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.899
FP236187.1 Danio rerio ENSDARG00000010083 I 0.899
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.899
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.899
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.899
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.899
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.899
A4F5G6 Xenopus laevis A4F5G6 I 0.899
CAL91351 Xenopus laevis CAL91351 I 0.899
AGAP006089 Anopheles gambiae AGAP006089 I 0.884
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.884
AAEL017168 Aedes aegypti AAEL017168 I 0.884
GG15438 Drosophila erecta FBgn0107689 I 0.884
GD14245 Drosophila simulans FBgn0185930 I 0.884
GJ13667 Drosophila virilis FBgn0200888 I 0.884
GK12272 Drosophila willistoni FBgn0214282 I 0.884
GE21749 Drosophila yakuba FBgn0238995 I 0.884
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.884
a2bp1 Drosophila melanogaster FBgn0052062 D 0.884
GF10597 Drosophila ananassae FBgn0087638 I 0.884
GH14949 Drosophila grimshawi FBgn0122424 I 0.884
GI11474 Drosophila mojavensis FBgn0134235 I 0.884
GM25214 Drosophila sechellia FBgn0180074 I 0.884
PHUM098700 Pediculus humanus PHUM098700 I 0.884
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.870
rbfox1l Danio rerio ENSDARG00000021184 I 0.870
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.870
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.870
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.870
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.870
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.870
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.870
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.855
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.855
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.855
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.855
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.855
ISCW013123 Ixodes scapularis ISCW013123 I 0.826
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.800
LOAG_04679 Loa loa LOAG_04679 I 0.797
Bm1_08900 Brugia malayi Bm1_08900 I 0.797
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.797
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.797
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.783
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.783
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.783
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.783
Smp_138880 Schistosoma mansoni Smp_138880 I 0.783
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.768
Smp_139980 Schistosoma mansoni Smp_139980 I 0.768
CRE07377 Caenorhabditis remanei CRE07377 I 0.754
fox-1 Caenorhabditis elegans T07D1.4 D 0.754
CJA09998 Caenorhabditis japonica CJA09998 I 0.754
CBG02108 Caenorhabditis briggsae CBG02108 I 0.754
RBFOX1 Felis catus ENSFCAG00000008241 I 0.739
CBN11651 Caenorhabditis brenneri CBN11651 I 0.739
87505 Helobdella robusta 87505 I 0.739
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.739
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.725
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.710