amel4_ncbi_hmm20735 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm20735 T31881_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.957
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.942
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.942
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.928
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm20735 RRM 190 258

Links

Other RRM family RBPs
Other Apis mellifera RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PHUM098700 Pediculus humanus PHUM098700 I 0.986
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.986
GI11474 Drosophila mojavensis FBgn0134235 I 0.957
GM25214 Drosophila sechellia FBgn0180074 I 0.957
GH14949 Drosophila grimshawi FBgn0122424 I 0.957
GG15438 Drosophila erecta FBgn0107689 I 0.957
GF10597 Drosophila ananassae FBgn0087638 I 0.957
GD14245 Drosophila simulans FBgn0185930 I 0.957
a2bp1 Drosophila melanogaster FBgn0052062 D 0.957
GJ13667 Drosophila virilis FBgn0200888 I 0.957
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.957
GE21749 Drosophila yakuba FBgn0238995 I 0.957
GK12272 Drosophila willistoni FBgn0214282 I 0.957
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.942
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.942
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.942
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.942
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.942
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.942
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.942
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.942
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.942
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.942
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.942
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.942
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.942
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.942
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.942
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.942
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.942
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.942
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.942
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.942
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.942
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.942
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.942
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.942
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.942
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.942
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.942
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.942
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.942
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.942
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.942
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.942
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.942
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.942
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.942
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.942
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.942
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.942
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.942
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.942
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.942
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.942
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.942
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.942
AGAP006089 Anopheles gambiae AGAP006089 I 0.942
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.942
RBFOX2 Homo sapiens ENSG00000100320 I 0.942
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.942
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.942
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.942
A2BP1 Homo sapiens ENSG00000078328 D 0.942
LOC100069362 Equus caballus ENSECAG00000018923 I 0.942
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.942
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.942
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.942
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.942
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.942
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.942
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.942
A2BP1 Gallus gallus ENSGALG00000007366 I 0.942
RBM9 Gallus gallus ENSGALG00000012540 I 0.942
AAEL017168 Aedes aegypti AAEL017168 I 0.942
LOC100066233 Equus caballus ENSECAG00000012667 I 0.942
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.942
a2bp1 Danio rerio ENSDARG00000014746 D 0.928
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.928
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.928
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.928
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.913
A4F5G6 Xenopus laevis A4F5G6 I 0.913
CAL91351 Xenopus laevis CAL91351 I 0.913
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.913
CAL91350 Xenopus laevis CAL91350 I 0.913
FP236187.1 Danio rerio ENSDARG00000010083 I 0.899
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.899
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.899
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.899
AAI55921 Xenopus laevis AAI55921 I 0.899
AAI69563 Xenopus laevis AAI69563 I 0.899
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.899
ISCW013123 Ixodes scapularis ISCW013123 I 0.899
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.899
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.899
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.899
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.884
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.884
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.884
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.884
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.884
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.884
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.884
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.884
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.884
RBFOX3 Homo sapiens ENSG00000167281 I 0.884
RBFOX3 Equus caballus ENSECAG00000023811 I 0.884
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.884
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.884
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.884
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.884
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.884
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.884
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.884
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.884
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.884
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.884
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.884
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.884
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.884
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.884
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.884
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.870
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.870
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.870
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.870
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.870
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.855
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.855
rbfox1l Danio rerio ENSDARG00000021184 I 0.855
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.841
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.841
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.829
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.812
Smp_138880 Schistosoma mansoni Smp_138880 I 0.797
Smp_139980 Schistosoma mansoni Smp_139980 I 0.797
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.797
Bm1_08900 Brugia malayi Bm1_08900 I 0.797
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.797
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.797
LOAG_04679 Loa loa LOAG_04679 I 0.797
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.783
CJA09998 Caenorhabditis japonica CJA09998 I 0.768
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.768
RBFOX1 Felis catus ENSFCAG00000008241 I 0.754
CRE07377 Caenorhabditis remanei CRE07377 I 0.739
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.739
CBG02108 Caenorhabditis briggsae CBG02108 I 0.739
fox-1 Caenorhabditis elegans T07D1.4 D 0.739
CBN11651 Caenorhabditis brenneri CBN11651 I 0.725
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.710
87505 Helobdella robusta 87505 I 0.710