BGIBMGA006880 (Bombyx mori)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIBMGA006880 T54999_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.957
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.899
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.899
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.884
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA006880 RRM 156 224

Links

Other RRM family RBPs
Other Bombyx mori RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GH14949 Drosophila grimshawi FBgn0122424 I 0.957
GM25214 Drosophila sechellia FBgn0180074 I 0.957
GG15438 Drosophila erecta FBgn0107689 I 0.957
GF10597 Drosophila ananassae FBgn0087638 I 0.957
AAEL017168 Aedes aegypti AAEL017168 I 0.957
GD14245 Drosophila simulans FBgn0185930 I 0.957
a2bp1 Drosophila melanogaster FBgn0052062 D 0.957
GE21749 Drosophila yakuba FBgn0238995 I 0.957
GK12272 Drosophila willistoni FBgn0214282 I 0.957
PHUM098700 Pediculus humanus PHUM098700 I 0.942
GJ13667 Drosophila virilis FBgn0200888 I 0.942
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.942
AGAP006089 Anopheles gambiae AGAP006089 I 0.942
GI11474 Drosophila mojavensis FBgn0134235 I 0.942
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.942
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.928
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.913
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.899
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.899
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.899
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.899
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.899
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.899
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.899
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.899
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.899
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.899
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.899
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.899
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.899
RBM9 Gallus gallus ENSGALG00000012540 I 0.899
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.899
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.899
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.899
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.899
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.899
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.899
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.899
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.899
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.899
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.899
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.899
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.899
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.899
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.899
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.899
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.899
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.899
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.899
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.899
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.899
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.899
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.899
A2BP1 Gallus gallus ENSGALG00000007366 I 0.899
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.899
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.899
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.899
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.899
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.899
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.899
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.899
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.899
LOC100066233 Equus caballus ENSECAG00000012667 I 0.899
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.899
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.899
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.899
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.899
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.899
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.899
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.899
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.899
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.899
LOC100069362 Equus caballus ENSECAG00000018923 I 0.899
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.899
RBFOX2 Homo sapiens ENSG00000100320 I 0.899
A2BP1 Homo sapiens ENSG00000078328 D 0.899
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.899
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.899
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.884
a2bp1 Danio rerio ENSDARG00000014746 D 0.884
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.884
ISCW013123 Ixodes scapularis ISCW013123 I 0.884
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.884
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.884
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.884
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.884
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.870
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.870
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.870
CAL91350 Xenopus laevis CAL91350 I 0.870
CAL91351 Xenopus laevis CAL91351 I 0.870
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.870
A4F5G6 Xenopus laevis A4F5G6 I 0.870
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.870
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.855
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.855
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.855
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.855
AAI55921 Xenopus laevis AAI55921 I 0.855
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.855
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.855
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.855
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.855
AAI69563 Xenopus laevis AAI69563 I 0.855
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.855
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.855
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.855
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.855
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.855
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.855
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.855
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.855
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.855
RBFOX3 Equus caballus ENSECAG00000023811 I 0.855
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.855
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.855
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.855
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.855
FP236187.1 Danio rerio ENSDARG00000010083 I 0.855
RBFOX3 Homo sapiens ENSG00000167281 I 0.855
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.855
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.855
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.855
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.855
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.855
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.841
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.841
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.841
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.841
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.826
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.826
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.826
rbfox1l Danio rerio ENSDARG00000021184 I 0.826
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.800
Bm1_08900 Brugia malayi Bm1_08900 I 0.783
LOAG_04679 Loa loa LOAG_04679 I 0.783
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.783
Smp_139980 Schistosoma mansoni Smp_139980 I 0.783
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.768
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.768
Smp_138880 Schistosoma mansoni Smp_138880 I 0.768
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.768
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.768
CBN11651 Caenorhabditis brenneri CBN11651 I 0.754
CJA09998 Caenorhabditis japonica CJA09998 I 0.739
fox-1 Caenorhabditis elegans T07D1.4 D 0.739
CRE07377 Caenorhabditis remanei CRE07377 I 0.739
CBG02108 Caenorhabditis briggsae CBG02108 I 0.739
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.725
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.710
RBFOX1 Felis catus ENSFCAG00000008241 I 0.710
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.710
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.710