RBFOX1 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000001284 T42704_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		1.000
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		1.000
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.986
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.913
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000001183 RRM 139 207

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBFOX2 Canis familiaris ENSCAFG00000001701 I 1.000
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 1.000
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 1.000
RBM9 Gallus gallus ENSGALG00000012540 I 1.000
RBFOX1 Canis familiaris ENSCAFG00000019082 I 1.000
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 1.000
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 1.000
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 1.000
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 1.000
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 1.000
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 1.000
RBFOX1 Procavia capensis ENSPCAG00000002630 I 1.000
Rbfox2 Mus musculus ENSMUSG00000033565 I 1.000
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 1.000
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 1.000
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 1.000
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 1.000
A2BP1 Gallus gallus ENSGALG00000007366 I 1.000
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 1.000
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 1.000
LOC100069362 Equus caballus ENSECAG00000018923 I 1.000
RBFOX2 Echinops telfairi ENSETEG00000005638 I 1.000
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 1.000
RBFOX2 Homo sapiens ENSG00000100320 I 1.000
A2BP1 Homo sapiens ENSG00000078328 D 1.000
LOC100066233 Equus caballus ENSECAG00000012667 I 1.000
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 1.000
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 1.000
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 1.000
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 1.000
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 1.000
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 1.000
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 1.000
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 1.000
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 1.000
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 1.000
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 1.000
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 1.000
RBFOX1 Sus scrofa ENSSSCG00000007917 I 1.000
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 1.000
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 1.000
Rbfox1 Mus musculus ENSMUSG00000008658 I 1.000
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 1.000
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 1.000
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 1.000
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 1.000
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 1.000
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 1.000
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 1.000
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 1.000
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 1.000
LOC708209 Macaca mulatta ENSMMUG00000003458 I 1.000
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 1.000
RBFOX2 Sus scrofa ENSSSCG00000000152 I 1.000
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 1.000
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 1.000
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 1.000
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 1.000
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 1.000
a2bp1 Danio rerio ENSDARG00000014746 D 0.986
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.986
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.986
A4F5G6 Xenopus laevis A4F5G6 I 0.971
CAL91350 Xenopus laevis CAL91350 I 0.971
CAL91351 Xenopus laevis CAL91351 I 0.971
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.971
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.971
AAI55921 Xenopus laevis AAI55921 I 0.957
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.957
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.957
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.957
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.957
FP236187.1 Danio rerio ENSDARG00000010083 I 0.957
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.957
AAI69563 Xenopus laevis AAI69563 I 0.957
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.942
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.942
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.942
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.942
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.942
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.942
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.942
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.942
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.942
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.942
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.942
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.942
RBFOX3 Homo sapiens ENSG00000167281 I 0.942
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.942
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.942
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.942
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.942
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.942
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.942
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.942
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.942
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.942
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.942
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.942
RBFOX3 Equus caballus ENSECAG00000023811 I 0.942
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.942
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.928
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.928
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.928
PHUM098700 Pediculus humanus PHUM098700 I 0.928
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.928
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.928
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.928
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.928
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.928
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.913
GJ13667 Drosophila virilis FBgn0200888 I 0.913
AAEL017168 Aedes aegypti AAEL017168 I 0.913
AGAP006089 Anopheles gambiae AGAP006089 I 0.913
GH14949 Drosophila grimshawi FBgn0122424 I 0.913
GE21749 Drosophila yakuba FBgn0238995 I 0.913
GK12272 Drosophila willistoni FBgn0214282 I 0.913
GD14245 Drosophila simulans FBgn0185930 I 0.913
GM25214 Drosophila sechellia FBgn0180074 I 0.913
GI11474 Drosophila mojavensis FBgn0134235 I 0.913
GG15438 Drosophila erecta FBgn0107689 I 0.913
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.913
GF10597 Drosophila ananassae FBgn0087638 I 0.913
rbfox1l Danio rerio ENSDARG00000021184 I 0.913
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.913
a2bp1 Drosophila melanogaster FBgn0052062 D 0.913
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.899
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.899
ISCW013123 Ixodes scapularis ISCW013123 I 0.899
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.899
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.899
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.899
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.855
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.855
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.843
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.841
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.826
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.812
Smp_139980 Schistosoma mansoni Smp_139980 I 0.797
RBFOX1 Felis catus ENSFCAG00000008241 I 0.797
LOAG_04679 Loa loa LOAG_04679 I 0.783
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.783
Bm1_08900 Brugia malayi Bm1_08900 I 0.783
Smp_138880 Schistosoma mansoni Smp_138880 I 0.783
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.783
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.768
CJA09998 Caenorhabditis japonica CJA09998 I 0.768
CRE07377 Caenorhabditis remanei CRE07377 I 0.754
fox-1 Caenorhabditis elegans T07D1.4 D 0.754
CBG02108 Caenorhabditis briggsae CBG02108 I 0.754
CBN11651 Caenorhabditis brenneri CBN11651 I 0.739
87505 Helobdella robusta 87505 I 0.725
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.710
a2bp1 Xenopus tropicalis ENSXETG00000005126 I 0.710
RBFOX1 Tarsius syrichta ENSTSYG00000005334 I 0.710
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.710
RBFOX2 Microcebus murinus ENSMICG00000014135 I 0.710