LOC_Os03g25960 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os03g25960 T44995_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g25960.1 RRM 88 158
LOC_Os03g25960.1 RRM 182 252

Links

Other RRM family RBPs
Other Oryza sativa RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G37220 Arabidopsis thaliana AT2G37220-TAIR-G N 0.789
cassava23554.valid.m1 Manihot esculenta cassava23554.valid.m1 N 0.746
cassava23555.valid.m1 Manihot esculenta cassava23555.valid.m1 N 0.782
cassava23556.valid.m1 Manihot esculenta cassava23556.valid.m1 N 0.782
Cucsa.306870 Cucumis sativus Cucsa.306870 N 0.754
Glyma10g06620.1 Glycine max Glyma10g06620.1 N 0.739
Glyma13g20830.1 Glycine max Glyma13g20830.1 N 0.755
mgf013487m Mimulus guttatus mgf013487m N 0.782
GRMZM2G042683 Zea mays GRMZM2G042683 N 0.930
GRMZM2G068715 Zea mays GRMZM2G068715 N 0.831
GRMZM2G158835 Zea mays GRMZM2G158835 N 0.831
Medtr1g076830 Medicago truncatula Medtr1g076830 N 0.761
cassava17995.valid.m1 Manihot esculenta cassava17995.valid.m1 N 0.775
30078.m002323 Ricinus communis 30078.m002323 N 0.775
SB02G040260 Sorghum bicolor Sb02g040260 N 0.824
CP29 Arabidopsis thaliana AT3G53460-TAIR-G N 0.725
BGIOSIBCE011310 Oryza indica BGIOSIBCE011310 N 1.000
BGIOSIBCE025708 Oryza indica BGIOSIBCE025708 N 0.831
BRADI1G20440 Brachypodium distachyon BRADI1G20440 N 0.817
BRADI1G61250 Brachypodium distachyon BRADI1G61250 N 0.859
XM_002877875.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001832 N 0.725
XM_002881451.1 Arabidopsis lyrata fgenesh2_kg.4__1774__AT2G37220.1 N 0.775
LOC_Os07g43810 Oryza sativa LOC_Os07g43810 N 0.831
B9MTC6_POPTR Populus trichocarpa POPTR_0006s12910 N 0.739
B9IFN7_POPTR Populus trichocarpa POPTR_0016s09190 N 0.761
SB01G034120 Sorghum bicolor Sb01g034120 N 0.923
ppa009295m Prunus persica ppa009295m N 0.768