XM_002877875.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_5001832 T44445_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_5001832 RRM 101 171
fgenesh1_pg.C_scaffold_5001832 RRM 256 326

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CP29 Arabidopsis thaliana AT3G53460-TAIR-G N 1.000
XM_002881451.1 Arabidopsis lyrata fgenesh2_kg.4__1774__AT2G37220.1 N 0.908
AT2G37220 Arabidopsis thaliana AT2G37220-TAIR-G N 0.894
cassava23555.valid.m1 Manihot esculenta cassava23555.valid.m1 N 0.831
cassava23556.valid.m1 Manihot esculenta cassava23556.valid.m1 N 0.831
30078.m002323 Ricinus communis 30078.m002323 N 0.817
B9MTC6_POPTR Populus trichocarpa POPTR_0006s12910 N 0.796
cassava17995.valid.m1 Manihot esculenta cassava17995.valid.m1 N 0.796
cassava23554.valid.m1 Manihot esculenta cassava23554.valid.m1 N 0.789
mgf013487m Mimulus guttatus mgf013487m N 0.782
BRADI1G20440 Brachypodium distachyon BRADI1G20440 N 0.775
Glyma10g06620.1 Glycine max Glyma10g06620.1 N 0.768
B9IFN7_POPTR Populus trichocarpa POPTR_0016s09190 N 0.768
Glyma13g20830.1 Glycine max Glyma13g20830.1 N 0.755
Cucsa.306870 Cucumis sativus Cucsa.306870 N 0.754
Medtr1g076830 Medicago truncatula Medtr1g076830 N 0.754
GRMZM2G042683 Zea mays GRMZM2G042683 N 0.746
ppa009295m Prunus persica ppa009295m N 0.746
GRMZM2G068715 Zea mays GRMZM2G068715 N 0.746
BRADI1G61250 Brachypodium distachyon BRADI1G61250 N 0.739
BGIOSIBCE025708 Oryza indica BGIOSIBCE025708 N 0.739
LOC_Os07g43810 Oryza sativa LOC_Os07g43810 N 0.739
GRMZM2G158835 Zea mays GRMZM2G158835 N 0.739
SB01G034120 Sorghum bicolor Sb01g034120 N 0.739
LOC_Os03g25960 Oryza sativa LOC_Os03g25960 N 0.725
SB02G040260 Sorghum bicolor Sb02g040260 N 0.725
BGIOSIBCE011310 Oryza indica BGIOSIBCE011310 N 0.725